Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04130 ATGGTTTCAACGAGACGCAGTGGATCTCTCTCTTCGAACAGTAGCAAAAGATCTTCCTCTTCGGAAGATAATTCTCCTTCATCTAAGCGTCGAAAGGTCAGCAATGGCGGTTCGCCGGAGAAACCAGTTCGTCCGGCGGAAAATTCCAAGGAATTATGTACTCCGGAGCCTGTGACTGATCCTGGAGAGCCTGTGACTGATCCTGGAGAATGTGCCTCCCGTGATGCTCAGATCATCGGAGATGCTGCCGAAGGTGCGAGTACTGACAAGGGTGATGCTACGCCGGCTGTGCCTGTGACGGCGCCGGTTGCTGATGCCACATGTCCATCGTTCTCCTATGAGAAACAAAATGCGAATTGTGAGGCTTCAGCTGCTCCCTGGTGCAGGTTCTTGTCGCAGCATGCACAGAATCCAAATGTTGTTGTCTGCACACCGAATTTCACAATTGGTTCTAATAGAAATTGCAACTTTCAATTGAAGGATCAAAACATCAGTGGAAATTTATGCAAGATCAGGCATACCCAGCGCGGGGGAAGTGCTGTAGCGGTGCTAGAAAGTACGGGTAGGAAAGGATGTGTGCTAGTAAATGGGTTGCTCATCAAGAAGAATAGCAGCTGTGTGCTTAGCTCGGGTGATGAGGTGTTTTTTGATGTGCTTGGACATCATTCATATATTTTCCAGCAACTAAATAATGAGGTTGTGGTCAGGGGTGCGGAAGTTCAAAGTGGTGTTGGGAAATTTTTGCAGCTTCAAAGGAGAAGAGGAGACTCTTCCACTGTGGCTGGGGCCTCTATTTTGGCCTCTCTTTCTAACCTCAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCAACAGTAAACCGCACCAGGGTGCTGATGTCTTTAGTCATTCTGTTCTTTGTGATGGTGCAGAAATTGAGCTTGATGGCTCGGAATCAGCTCCAAATGTGCAGAGTGATAAAGCAGCTGATGTTGGCGCAAATGACAAGAATTCAACAATGGATTGCGATCCAGAGGCAGGCAATGTAAAACTTTTTGGGGTGTTAGAAGAAAGAAATGGGACGAGGGATATGCAGGTCGCATCGACTTCGGGTACATCTGTGCGTTGTGCAGTGTTTAAAGAAGATGTTCATGCTGCAATACTCGATGAAAAAGAAATAGACATGTCTTTTGACAACTTCCCATACTACTTAAGTGAGAATACAAAAAAGGTCCTTTTGGCAGCTTGCTTCATACACCTCAAGCATAAAGAACATGAAAAGTACACTGCAGATCTTACTACCATAAACCCTCGTATTCTGCTATCAGGACCTGCAGGGTCAGAAATATACCAGGAGACGTTAGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCAGAGCTATTCAAAGATGGATTTAATGCTGAAAAATCCTGCAGCTGCACTAAACAAAGTCCCAGAGTCACCGACATGGCTAGGAGCATGGACCCATTAGCTAGTGAATTAGAGACACCTAGCTCTTCAAATGCACCTACATCAAATGGCCTCGAGTCTCAACCTAATTTGGAAAGTGACAGCCTACCATCCACCTCAGGGACAGCTAAAAATTGCTTGTTCAAATTAGGTGATAGAGTGAAATTTAGCTGTTCATCATCTTGTGCCTTGTACCAGGCATATTCAAGGGGCCCACCTAATGGTAGTTGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACTCATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATATTTTTGCAATGTTACTGATCTTCGATTGGAAAACAGTGGTGTGGAAGAACTGGACAAATTACTTATTAATTCATTATTTGAGGTTGTTTATAGTGAGAGCAGAAGTGTGCCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATAGTTGGAAATGGAGATCCATATTCATTTAAAAGTAAGCTTGAAAAGCTTCCAGACAATGTGGTGGTAATAGGTTCACACACTCATACTGACAGTCGCAAGAAGTCGCATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACAGCCCTTCTTGACTTGGCTTTCCAAGAGAGTCTTGGACGATTGCATGACAGGGGGAAAGAAGTCCCAAAGCCAAACAAAACTCTGACTAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGGATGAGACACTTCTAGCATCTTGGAAGCAGCAACTGGATAGAGATGTTGAGACTCTTAAAATCAAAGGAAATTTACATCAATTGCGCATGGTTTTGGACCGTTGTGGAATGGAATGCAAAGGACTCGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGTCACCACCTCATGCACAATTCTGAAGCTGATCCTGATTCAAAGCTGGTATTGTTGTGTGAGAGCATCCAGTTTGGAATTGGGATCTTGCAGTCTATCCGGAATGAGCCCAAGAGCCAGAAAAAGTCTCTTCAGGATGTTGCAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCAAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAGTTGGTTATGCTTCCTTTGCAGAGGCCTGAGCTGTTTTGCAAAGGGCAATTAACCAAGCCGTGCAAAGGTATCCTATTATTTGGTTCCCCCGGAACGGGTAAAACCATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAATATTTCTATGTCAAGCATTACATCTAAGTGGTTTGGTGAGAGTGAGAAATACGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTGCTCCTAGTGTTGTATTTGTTGACGAAGTTGACAGCATGTTGGGTCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGTACAAAGGATACTGAACGAGTTGTTGTGCTTGCAGCCACTAACAGGCCATTTGACTTAGATGAGGCTGTCATCAGGAGGCTGCCACGAAGATTGATGGTAAACTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTCGATTTTGATACAGTTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAGCTGCTGCACATCGTCCAATTAAAGAGATATTGGAGAAGGAAAAAAAGGAACATGCTGCTGCTCTTTCAGAAGGTCGACCTGCTCCAGCATTATGTGGCAGTGAGGACATCCGATCTTTAAACATGGAAGACTTTAAATATGCACATCAACAGGTATGCGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAGTGGAATGACCTATATGGCGAAGGTGGTTCCAGAGTAAAGAAGGCACTAAGCTATTTCATGTGA 3600 0.4328 MVSTRRSGSLSSNSSKRSSSSEDNSPSSKRRKVSNGGSPEKPVRPAENSKELCTPEPVTDPGEPVTDPGECASRDAQIIGDAAEGASTDKGDATPAVPVTAPVADATCPSFSYEKQNANCEASAAPWCRFLSQHAQNPNVVVCTPNFTIGSNRNCNFQLKDQNISGNLCKIRHTQRGGSAVAVLESTGRKGCVLVNGLLIKKNSSCVLSSGDEVFFDVLGHHSYIFQQLNNEVVVRGAEVQSGVGKFLQLQRRRGDSSTVAGASILASLSNLRQDLTRWKSPSQTNSKPHQGADVFSHSVLCDGAEIELDGSESAPNVQSDKAADVGANDKNSTMDCDPEAGNVKLFGVLEERNGTRDMQVASTSGTSVRCAVFKEDVHAAILDEKEIDMSFDNFPYYLSENTKKVLLAACFIHLKHKEHEKYTADLTTINPRILLSGPAGSEIYQETLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELFKDGFNAEKSCSCTKQSPRVTDMARSMDPLASELETPSSSNAPTSNGLESQPNLESDSLPSTSGTAKNCLFKLGDRVKFSCSSSCALYQAYSRGPPNGSWGKVVLLFDDNPLSKIGVRFDKLIPDGVDLGGACEGGQGYFCNVTDLRLENSGVEELDKLLINSLFEVVYSESRSVPFILFMKDAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKKSHPGGLLFTKFGSNQTALLDLAFQESLGRLHDRGKEVPKPNKTLTKLFPNKITIHMPQDETLLASWKQQLDRDVETLKIKGNLHQLRMVLDRCGMECKGLETLCIKDQTLTNENAEKIVGWALSHHLMHNSEADPDSKLVLLCESIQFGIGILQSIRNEPKSQKKSLQDVATENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGSPGTGKTMLAKAIATEAGANFINISMSSITSKWFGESEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVVVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEELSPDVDFDTVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKEHAAALSEGRPAPALCGSEDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNDLYGEGGSRVKKALSYFM* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04130 1199 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g04130 1199 MobiDBLite consensus disorder prediction 311 337 - -
Rops2g04130 1199 CDD FHA 129 227 - -
Rops2g04130 1199 Gene3D - 1067 1161 - -
Rops2g04130 1199 MobiDBLite consensus disorder prediction 1 71 - -
Rops2g04130 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1173 IPR027417 -
Rops2g04130 1199 Pfam ATPase family associated with various cellular activities (AAA) 935 1064 IPR003959 GO:0005524|GO:0016887
Rops2g04130 1199 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 374 1198 - -
Rops2g04130 1199 ProSitePatterns AAA-protein family signature. 1038 1057 IPR003960 GO:0005524|GO:0016887
Rops2g04130 1199 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 893 1069 - -
Rops2g04130 1199 MobiDBLite consensus disorder prediction 512 542 - -
Rops2g04130 1199 Gene3D - 126 234 - -
Rops2g04130 1199 Pfam FHA domain 148 214 IPR000253 GO:0005515
Rops2g04130 1199 SMART AAA_5 931 1068 IPR003593 GO:0016887
Rops2g04130 1199 Pfam AAA+ lid domain 1088 1126 IPR041569 -
Rops2g04130 1199 Gene3D - 893 1174 IPR027417 -
Rops2g04130 1199 MobiDBLite consensus disorder prediction 23 37 - -
Rops2g04130 1199 SUPERFAMILY SMAD/FHA domain 125 218 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04130 Rops-Chr2 74983676 75000314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04130 894 1142 Calmodulin-binding Proteins AT3G56690 39.453 1.42e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04130 - - gmx:100816731 1910.58