Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04127 ATGGACGTTGTTATAGAGGTTCTCTCCGGTGCGCACTTCTCCGGTTGGCATCCTTCAATGACGTCATCTTCTTCTCCAACTCCCTCTCATCAACCCTTCGTGATCGGGGTCTCTGGAGGTACGGCATCGGGGAAAACCACTGTATGTGACCTGATCATTCAACAATTGCAAGATCACAGAGTTGTGCTCGTCAGTCAGGATTCGTTCTACCGTGGTTTAACAAATGATGAATTGAAACGCGTTCACGAGTATAATTTTGATCATCCCGATGCATTTGATACAGAGCAACTTGTAGAAACCCTCGGCAAGCTTAAATCTGGACAGTCAGTTCAGGTTCCGATATATGATTTTAAGCTCCACCAGAGATCTTCTGACAGATCCAGACAGGTCAATGCATCTGAAGTAATAATTCTAGAGGGTATATTGGTTTTTCATGAACGTCGTGTCCGCAACATGATGAATATGAAGATATTTGTCGATGCAGATCCTGATGTAAGGCTTGCCCGCCGAATAAGACGAGATACCGTTGAGAGGGGTAGAGATGTACACTCTGTACTGGAACAGTACGCAAAATTTGTTAAGCCCGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCCGACATCATTATACCTCGTGGGGGAGAGAATCGTGTAGCAATTGACTTGATCGTTCAACATATCCGCACTAAACTTGGCCAACACAACCTCTGCAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATCAGGAAATATCAAAGCATGACTTTGTGTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATTACACCTACAGGATCAATTTATACTGGGGTTGACTTTTGTAAGAAATTGTGCGGAGTATCCATTATTCGAAGTGGCGAAAGCATGGAAAATGCTTTGCGTGCATGCTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCACCGTGAAGGTGATGAAACCCAGCCTATTTATGAGAAGCTTCCAAAAGATATTTCGGAGAGACACGTTCTTCTCATGGACCCAGTACTTAGTACAGGTAACTCTGCCAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCGTATAATATTCCTCAACCTCATCTCTGCTCCTGAGGGAATACATTGTGTATGTAAACGTTTTCCGCACCTGAAAATTGTCACTTCGGAGATTGAAGAAGGACTAAATGACCAGTTCCGTGTCATGCCAGGGTTAGGAGAATTCGGTGACCGCTATTTTGGTACGGACGACTCCTAG 1362 0.4295 MDVVIEVLSGAHFSGWHPSMTSSSSPTPSHQPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPDAFDTEQLVETLGKLKSGQSVQVPIYDFKLHQRSSDRSRQVNASEVIILEGILVFHERRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDQEISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDETQPIYEKLPKDISERHVLLMDPVLSTGNSASQAIELLIKKGVPESRIIFLNLISAPEGIHCVCKRFPHLKIVTSEIEEGLNDQFRVMPGLGEFGDRYFGTDDS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04127 453 Pfam Phosphoribulokinase / Uridine kinase family 34 220 IPR006083 GO:0005524|GO:0016301
Rops2g04127 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 225 IPR027417 -
Rops2g04127 453 NCBIfam uridine kinase 32 232 IPR000764 -
Rops2g04127 453 PRINTS Uridine kinase signature 200 213 - -
Rops2g04127 453 PRINTS Uridine kinase signature 107 122 - -
Rops2g04127 453 PRINTS Uridine kinase signature 164 174 - -
Rops2g04127 453 PRINTS Uridine kinase signature 178 189 - -
Rops2g04127 453 PRINTS Uridine kinase signature 32 49 - -
Rops2g04127 453 PRINTS Uridine kinase signature 62 73 - -
Rops2g04127 453 ProSiteProfiles UvrC family, homology region profile. 120 221 IPR001162 GO:0009381
Rops2g04127 453 PANTHER URIDINE KINASE 29 361 - -
Rops2g04127 453 FunFam Uridine kinase 29 235 - -
Rops2g04127 453 CDD UMPK 34 232 IPR000764 -
Rops2g04127 453 CDD PRTases_typeI 309 423 IPR000836 -
Rops2g04127 453 FunFam Uridine kinase 236 450 - -
Rops2g04127 453 SUPERFAMILY PRTase-like 235 451 IPR029057 -
Rops2g04127 453 Gene3D - 236 450 IPR029057 -
Rops2g04127 453 Gene3D - 29 235 IPR027417 -
Rops2g04127 453 Pfam Uracil phosphoribosyltransferase 250 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04127 Rops-Chr2 74965668 74971424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04127 1 452 PRT Gene Family AT5G40870 77.941 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04127 K00876 - gmx:100816209 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04127 2 74965668 74971424 Rops2g04127 2 74965668 74971424 ECH