Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04113 ATGGCTACTTGTACTTCTCTTTCCCCTTGTCCTCACACCCTCCTCTATTACAGGCACCGCCCTCACCCACCAAGACTTTCCCCTTCTTGCTCTTTTCGCTCCTCTGCTCTCCCAGATACTGATGTATCTAAAGTACTGAACAAAATATCAAAAAGAATAGAAGGTCCTAGAAAAAGCATGGAGGACTCTGTTCAACGCAAGATGGAACAATTTTACGAAGGATCCGATGGGCCACCCCTCCGAGTTCTGCCAATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGATCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGTGTCCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCAGTAGTTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGCATTGGATTCTCATACGCCAATTTTCGCATCATCATTTACAATGGAGCTTATAAGAAAACGTTTGAAGGATCATGGAATTTTTGTTCCATCCCGACTCAAAATATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAGCCTATCACAGTGACCCATTCTATTCCTGATTGCTGTGGATTAGTTATTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCAGCTAAAGGAAGGGTTATTACAACCCAATTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTGACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAAGATATTGATGCTTATGCACCCAAGGATTTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCAGCCTTGAATCTTGCATCTTATGGAAGTAGTCATTTTTTCAAACTGACAAAGGAAGATGTTGTTTTGTATTCCGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTCATGGAAATGCTAAACCGCATATCAGAGATTGGACCAACAATAGTCATGGGGAGGAATGAATTGCTGCACACATCTGGTCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAAAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTTGTTTCACTCAGGAAAGAGAATTTGCAGTTGATGTATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGGTCAGCATGGAAATATGTCGCCCTCAAAATTTAGACAATTCAGTTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGGAAGCTGTTGGACGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTATTGACAAAAATGGTTAGGAAGTATAGTGGCAAACGGCCTGAAGTTATTGCCATGGCCACAGAAAATCCTGCCGCTGTTCTTGCTTCTGAGATAAACACAAGGTTGTCTGGCAAATCCCATGTGGGTGGGATATCAACATTGAGAAAAGTGGTGGATGGACACAGGAAAGAAAATCAGTCTGCCAAAATGCAAATGAGAGTTGGTGCAGATGATGGTATTGATGTTGAAGGTATACTACATAAGGAAGATGCTGCTACCTCAAGTGGAGCCGAGGGTGATTTGTCTGATACAGAGGATTCAGATGAATTTTGGAAATCATTTGTTGAATCCTCACCAGTTGGGAAGTCAATCAAAGCTAATAATGGTTATGTTCCACGAAAGGAGAAGTCCCATCTGAAGAATGATGGTTCTGAAGACGCTGAAGAATGCAAGTCTGAAAAGATGTCAAATTCTGAAGCCAAATCTTCAAAATCAGTAAAGAGAAACCAATGGAAAGAGGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGAAAACTCAATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGATGAAATATCTCAGAACTTGTTGGCTAACGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTATGTGGACGTCTTTGGTACGGAAATATGAGGAGGTCAAGAATGAGGATGGAAAGAAAAGATGGCCATATCTTGAGGACATGGAAAGGATTCTGTCTGATAATGAGGCACTTGCAAAATAA 2613 0.4156 MATCTSLSPCPHTLLYYRHRPHPPRLSPSCSFRSSALPDTDVSKVLNKISKRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKIFRTRKKFVAGPFEIEPITVTHSIPDCCGLVIRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHFFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGPTIVMGRNELLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLRKENLQLMYSDGDKAFGTSSELFIDERLRIALDGIIVVSMEICRPQNLDNSVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERIVSEVLTKMVRKYSGKRPEVIAMATENPAAVLASEINTRLSGKSHVGGISTLRKVVDGHRKENQSAKMQMRVGADDGIDVEGILHKEDAATSSGAEGDLSDTEDSDEFWKSFVESSPVGKSIKANNGYVPRKEKSHLKNDGSEDAEECKSEKMSNSEAKSSKSVKRNQWKEEEVKKLIGMRGKLNDRFQVVKGRMALWDEISQNLLANGISRSPGQCKSMWTSLVRKYEEVKNEDGKKRWPYLEDMERILSDNEALAK* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04113 870 SMART sant 777 839 IPR001005 -
Rops2g04113 870 Gene3D - 781 842 - -
Rops2g04113 870 Gene3D - 281 431 IPR042173 -
Rops2g04113 870 MobiDBLite consensus disorder prediction 739 778 - -
Rops2g04113 870 ProSiteProfiles Myb-like domain profile. 773 837 IPR001005 -
Rops2g04113 870 Gene3D - 84 496 IPR036866 -
Rops2g04113 870 PANTHER RIBONUCLEASE J 1 869 - -
Rops2g04113 870 SUPERFAMILY Metallo-hydrolase/oxidoreductase 80 494 IPR036866 -
Rops2g04113 870 CDD RNaseJ_MBL-fold 83 494 - -
Rops2g04113 870 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 430 474 IPR011108 -
Rops2g04113 870 CDD GT1 779 844 - -
Rops2g04113 870 MobiDBLite consensus disorder prediction 732 778 - -
Rops2g04113 870 Pfam Myb/SANT-like DNA-binding domain 778 861 IPR044822 -
Rops2g04113 870 Pfam Beta-lactamase superfamily domain 103 239 IPR001279 -
Rops2g04113 870 SMART Lactamase_B_5a 92 289 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04113 Rops-Chr2 74812110 74826908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04113 780 863 Trihelix Transcription Factor Family AT2G38250 36.782 8.06e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops2g04113 Lactamase_B_2 3e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04113 - - gmx:100814619 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04113 2 74812110 74826908 Rops10g00788 10 18411161 18422784 PCT