Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04102 ATGGCGTGTCCGGAAACGAACGCTGAAGTGTTTCCGTGGCTGAAATCGATGCCGGTGGCGCCGGAGTACCGTCCGACACCGGCGGAGTTCCAAGATCCGATCGGTTACATTTTTAAGATAGAGAAAGAAGCTTCTAGATATGGAATCTGTAAGATCATTCCTCCAGTTCCACCTTCTTCTAAGAAAACCGCAATTGGTAACCTGAACCGGTCTCAACCCGGGTTCACCACTCGTCAGCAGCAGATCGGGTTCTGTCCACGTCGACCACAACCGGTTCGGCGTCCGGTCTGGCACAGCGGCCACCACTACTCCTTCCGTGACTTCGAGTCAAAGGCCAAAGCTTTCGAGAAAAGTTACCTCAAGAAAGGGAAAAAATGTTCTTCACTTTCCCCTCTTGAAATTGAAACTCTCTATTGGAAAGCCACTGTTGATAAACCCTTTTCCGTTGAGTACGCGAACGACATGCCAGGCTCTGCGTTTTGTCCGCTAAATGATGGGGGTGGTGGGGGAGATGGTGTTGTTACTGTTGGTGAGACTGCTTGGAACATGAGAGGGGTTTCGAGGGCAAATGGGTCACTTTTGAGGTTCATGAAGGAGGAGATTCCTGGTGTTACTTCTCCTATGGTGTATGTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAGGACCATGATTTGCATAGCTTGAATTACCTTCATATGGGTGCTCCTAAGACCTGGTATGGTGTTCCAAGGGATGCTGCTGTAGCATTTGAGGAAGTTGTCAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTGGGTGAGAAAACTACTGTGATGTCGCCAGAAGTATTCATTGGTGCCGGTATTCCCTGCTGCAGGTTAGTGCAAAATGCTGGTGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGCGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTAGGCCTTGCCTTGTGTTCTAGAGTCCCTGGAGACATCAGTGCTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGTAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGATGTGTTACAGAATAATGATCTGCTTCACGTACTTGGCAAAGGATCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTCTCTGTTTGCTCGAAATTACGTGTTGGATCCCAACAAATAAAAGTGAACCCTGAGTTTTCTCTCAATGTATGCAATTTTGAGGGAATGAATTCCTCAAAAGGTCTTATTTCTGATGACCTGGTGTACAACAGGAATCATGGAATAAAAAAAGTAAAAGGTTTTTATTCTGTAAAAGAAAAGTTTGCTACATTGTGTGAAAGGAACAGGGTTTGTTCATTCGATGGAAATGGTAACATGTGCACTTCAAGTTCAAAAACACTGCAAAGAGACACTACTGATAAAGGAACAAGTCAAGGAGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCGGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAAATAGCAATAAATTTACCATTGCTCATGAAGATGCAAGTATTCCCAAGCCGAACACATATACAGGATGGACTAAACAGAATGCCAGAAATGATTTATATGATGTTCCTGTTGAATCTGTTGAACAACAGACACAGACACAGACTGCTGATCAAAATTATGAGGCTTTAAACACTGAAAGAAAAAAAGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGTTGGCAGTGATGATATTCCTTCGAAGAGTGTTGACAATTATGAGTATTATATGCATAAGAAAGTTGAGAGCATTATGAGTCCGTTTGACTACTCTGTTAAGTCAGAAGATTATGACATGACTTCAGGGGCAGCATTTAAAAATACTAGGGCAGGACCTCATTCCACCTTGAATTGTTCCCAAGATACTCATGCTGAAACGTCATTGTTGGCCAAGACTGTGATTCCCGTTGATAATAAAAATGTTTCATTGGTGCCACCATCTGATGAAGACTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGCGGGGCACACATATCGCTTCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGATTACACATGGAAGAATACTGTGTACAGGCATGCCAACAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAAGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGCGCCAATCTTAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCCTACAGGCTCACCCATAGAACCCAAGGTCTATCGGAGAAGGGCCAACAAGCAGAGGAAGGTGGTTGCTGGGAAATGGTGCGGCAAAGTTTGGATGTCCAATCAAGTGCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAAACTTACATGGGTGGCCATTACCTGATGAGAAATTTGAGAGATCAGAAATTACCAACAAAAGCAACACTACATTCAGAAAATCTGGTAGGAAAAGGAAAATGACTAAAGAGAGTGGAAGAGCAAGGGAAGGAAGTTTTGCTGAGAGAGATTGGGTTTCAGATAATTCAATTGAAAATAAATCCAATCAATCTCAAAGGAGGATTCTTGGAAGTAAGCGAACCAGGCATATTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTGTGCAGCATCATAGAAAGCCTAGAAGCAAGCATATAAAATGCGTTGAAAGTGATGCAGTTTCAGATGATTCACTGGATGATAATACTCGTATACGGCATTGGAGGAAGGCTAATGCCAAGGAAACTAAATTTATTGAAAGTGATGTGGTTTCAGATGATACAATGGACTATGATTCTGATTGGCCACATAGGGGAGAGCTTAGTGACAAGCAAGATGCTATTTCAGAAGATTCATCGGATGTTGGTTCTCTTCAGCTGCATCGGAAGACTCCTAAAAGCAGGTATGATCAATACACTGCAGAAGAAGATGTGATTTCTGATGACCAAATGGAGGTTTATTTTCAGAAGCAGAAAGGTAGGATATCTAAAAGCAGGCAGCGCAAATACCTTTCCGAAAAAGATACAGTGATATCTGATGACCAACTGGAGCACCACATGCAGAAACAGCAACGGAGGAATCCTAAAAGCAGGCAAGACAAATACCTTGCTGGAGAGGATATTTTATCTGATGACCAACCAGAGGGCCATTCTCGCAAATATCAAAGAAGAATTCCTAAGGACAGGCAAGCCAAATCTGTTGCTGGGGAAGACGAAATGTCTGATGACCAGTTGGAGGATCAATTTCAGAAGCCTCAAAGGAGTGTTCGAAGGAGCAGGCAAAACAAATATGTTGATAGAGAAGTTATGGATGACTCAGCTGAAAATAATTCTCATCTGCTGTGCAGAACTCCTAAAAGGAAGCAAGCTAAATGCTTGGATGAAGACTCTCTAAATTCAGATGATCAAATGGAGGAGGAGGATTCTCATCCGCAGCACAGGAGAACTCTTCGAAGTAAACAATCTAAATCACAGACTCTTAAACAAATGAAACAAGCTAACTCTCTTCGGGTGAGAAGCAAGACAGTCCGGCCTATGAAACGAGGCGCTCATATGCTAATGAAATCAAAGACTCCTCGGCAAATGAAGCAGCAGCCTCGAGTGTGGAATAATCAATCTGGTAACTCCAGAAACGAGACTTCACTTATGGAAGAGGAGGAAGAAGGTGGACCTAGCACGCGCCTTAGGAAGAGAGTCCCAAAACTTCAGAAGGAATCAGAAGGAAAAACAAAAGAAAAGGAAACCAAAAGGAAAAAAGTGAAGAATGCAGCAGCTGGGCAGGCCAAAGGGAAGGATGAGGAAGGAGAATACCAATGTGACATTGAGGGGTGCACCATGAGTTTTGGGTCTAAACAGGAGCTGGCGCATCATAAGAAGAATATCTGTCCTGTGAAAGGATGTGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGTAGAGTTCATGAGGATGCCCGCCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACCTTCAAATGGGCATGGGCTCGAACTGAGCATATTCGAGTCCACACTGGTGCTCGTCCATATGTATGTGCTGAGCCAGGGTGTGGCCAAACATTCAGATTTGTATCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTTGA 4617 0.4327 MACPETNAEVFPWLKSMPVAPEYRPTPAEFQDPIGYIFKIEKEASRYGICKIIPPVPPSSKKTAIGNLNRSQPGFTTRQQQIGFCPRRPQPVRRPVWHSGHHYSFRDFESKAKAFEKSYLKKGKKCSSLSPLEIETLYWKATVDKPFSVEYANDMPGSAFCPLNDGGGGGDGVVTVGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFIGAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRVPGDISAEPRSSRLKDKRKGVGETVIKELFVQDVLQNNDLLHVLGKGSAIVLLPRSSSDFSVCSKLRVGSQQIKVNPEFSLNVCNFEGMNSSKGLISDDLVYNRNHGIKKVKGFYSVKEKFATLCERNRVCSFDGNGNMCTSSSKTLQRDTTDKGTSQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWIVGSGVNSNKFTIAHEDASIPKPNTYTGWTKQNARNDLYDVPVESVEQQTQTQTADQNYEALNTERKKGNTALALLASAYGNSSDSEEDQGDSDIAVGSDDIPSKSVDNYEYYMHKKVESIMSPFDYSVKSEDYDMTSGAAFKNTRAGPHSTLNCSQDTHAETSLLAKTVIPVDNKNVSLVPPSDEDSSRLHVFCLEHAAEAEQQLRPIGGAHISLLCHPDYPKIEAEAKFVAEELGIDYTWKNTVYRHANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSPTGSPIEPKVYRRRANKQRKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKNLHGWPLPDEKFERSEITNKSNTTFRKSGRKRKMTKESGRAREGSFAERDWVSDNSIENKSNQSQRRILGSKRTRHIERDDTASEGDYSPVQHHRKPRSKHIKCVESDAVSDDSLDDNTRIRHWRKANAKETKFIESDVVSDDTMDYDSDWPHRGELSDKQDAISEDSSDVGSLQLHRKTPKSRYDQYTAEEDVISDDQMEVYFQKQKGRISKSRQRKYLSEKDTVISDDQLEHHMQKQQRRNPKSRQDKYLAGEDILSDDQPEGHSRKYQRRIPKDRQAKSVAGEDEMSDDQLEDQFQKPQRSVRRSRQNKYVDREVMDDSAENNSHLLCRTPKRKQAKCLDEDSLNSDDQMEEEDSHPQHRRTLRSKQSKSQTLKQMKQANSLRVRSKTVRPMKRGAHMLMKSKTPRQMKQQPRVWNNQSGNSRNETSLMEEEEEGGPSTRLRKRVPKLQKESEGKTKEKETKRKKVKNAAAGQAKGKDEEGEYQCDIEGCTMSFGSKQELAHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDARPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR* 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04102 1538 Gene3D Classic Zinc Finger 1444 1530 - -
Rops2g04102 1538 SMART c2h2final6 1476 1500 IPR013087 -
Rops2g04102 1538 SMART c2h2final6 1506 1532 IPR013087 -
Rops2g04102 1538 SMART c2h2final6 1423 1445 IPR013087 -
Rops2g04102 1538 SMART c2h2final6 1446 1470 IPR013087 -
Rops2g04102 1538 SMART cupin_9 175 344 IPR003347 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1344 1365 - -
Rops2g04102 1538 Pfam jmjN domain 21 54 IPR003349 -
Rops2g04102 1538 Pfam JmjC domain, hydroxylase 208 326 IPR003347 -
Rops2g04102 1538 FunFam Probable lysine-specific demethylase ELF6 1473 1502 - -
Rops2g04102 1538 FunFam Probable lysine-specific demethylase ELF6 1503 1532 - -
Rops2g04102 1538 ProSitePatterns Zinc finger C2H2 type domain signature. 1448 1470 IPR013087 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 951 1050 - -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 973 992 - -
Rops2g04102 1538 SUPERFAMILY beta-beta-alpha zinc fingers 1446 1482 IPR036236 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1366 1417 - -
Rops2g04102 1538 ProSitePatterns Zinc finger C2H2 type domain signature. 1508 1532 IPR013087 -
Rops2g04102 1538 ProSiteProfiles Zinc finger C2H2 type domain profile. 1446 1475 IPR013087 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1008 1030 - -
Rops2g04102 1538 SUPERFAMILY Clavaminate synthase-like 99 344 - -
Rops2g04102 1538 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1472 - -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 653 675 - -
Rops2g04102 1538 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Rops2g04102 1538 ProSiteProfiles Zinc finger C2H2 type domain profile. 1476 1505 IPR013087 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1308 1325 - -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1273 1301 - -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1083 1103 - -
Rops2g04102 1538 FunFam Probable lysine-specific demethylase ELF6 13 348 - -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1159 1260 - -
Rops2g04102 1538 SUPERFAMILY beta-beta-alpha zinc fingers 1486 1530 IPR036236 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1159 1417 - -
Rops2g04102 1538 ProSiteProfiles JmjC domain profile. 178 344 IPR003347 -
Rops2g04102 1538 ProSitePatterns Zinc finger C2H2 type domain signature. 1478 1500 IPR013087 -
Rops2g04102 1538 SMART JmjN_1 19 60 IPR003349 -
Rops2g04102 1538 ProSiteProfiles Zinc finger C2H2 type domain profile. 1506 1537 IPR013087 -
Rops2g04102 1538 MobiDBLite consensus disorder prediction 1083 1122 - -
Rops2g04102 1538 Gene3D Cupin 13 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04102 Rops-Chr2 74585981 74595888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04102 1140 1537 C2H2 Transcription Factor Family AT3G48430 40.835 2.04e-67 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g04102 JmjC 3.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04102 - - gmx:100775271 2105.1