Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04101 ATGGAACCCTCTGAATCCGATTCAGTTGCAGTTTCCAATGACAAAGACCCTCAATTGGGTTCTGAGCAGCCACCACCTTCTCCCCCCGGTGCCCATTCTCCACCGTCAGATCTCAATCTCACGGCGGAGGAGGACGCACTTGGTGAGGTTCTTCAGAACAAGTGTGGTTTGAAGTGTGAGGAAGAAGGGGGTGCAGAAACCGGGGATAAAGTTGCGAGCTTTGACGATGGTGGAGGGGTTTGTGATGAAGAATCTGGTAAGGGTGAAGTGTGTGATGGAGATAGTAGGGGTTGGGAGACTAATTGTTGGAATGAGGATGTGAATGATGAAGTGGGTAGAGATGAAGTGGAGCAGAAGGAAGAGATAACACACCATCGTGTGATTCTTCATCACAAGTGTGATTTGAAGTGTGAGGAAGAAGGGGGTGCAGAAACCGAGGATAAAGTTGTGAACTTTGACGATGATGGAGGGGTTTGTGATGAAGAATCTGGTAAGGGTGAAGTGTGTGATGGAGATAGTAGGGGTTGGGAGACTAATAGTTGGAATGAGGATGTGAATGATGACGTGGGTAGAGATGAAGTGGAGCAGAGGGAAGAGCAAAACAGTGGTAGAAGAACTCATCACTACCCTTTGAGGCCTGAAGCTGAAGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGATTCAATTGCAAGTTTAATCACCCCATTAGGAGGAAAAACCAGGCTGTTACGGAGAAGGTGGGAGAAAGAGAAGAACCAACAGAAAGATCGAGCCCAACAGAATGCAAGTATTATCAAAGGTCTGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAAAGTTCAACAGCACCAATTTTAGAACTTAACTTTCTTGGCCTACCTATTCGTCTGGGGGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAGGTTTAATCATCCTGACCCTACTGATGTTGGAGGATGTGATCCTCCTTCAGGGTATGGTAATGGAGGGTCTGTTTCATTACAAGGTGTATCCCAATCATCTGTACCCTCCTGGTCTTCTCCAAGTACACTAAATGAAACATCTTTTGTGCCAATGATGCTTTCGCCTACTCAAGGAGTTTCTCCACAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACCTCTCTGAGAGGAGCATGCATCCGTCTTCTACATATGTCATGAACAACCCAGCCATTGAAACATACATGCACCATCAAAAGCAGATTCCTGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCTAAGAATCGGGTTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGCTTGCCTCTGAGACCCGACCAGAGTGTCTGCTCACATTACAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAGACTCTCCTTCCTTAATGATGATGCCTGGACTTGGCCAGCAATCCTACTCAAACTCAGCTAGTGTTGAGGTGGCTCGGATGGGTGGAAGTGCAGGTGCAACTGATGCTACAATCCAGCAATCTGTGTAA 1659 0.4545 MEPSESDSVAVSNDKDPQLGSEQPPPSPPGAHSPPSDLNLTAEEDALGEVLQNKCGLKCEEEGGAETGDKVASFDDGGGVCDEESGKGEVCDGDSRGWETNCWNEDVNDEVGRDEVEQKEEITHHRVILHHKCDLKCEEEGGAETEDKVVNFDDDGGVCDEESGKGEVCDGDSRGWETNSWNEDVNDDVGRDEVEQREEQNSGRRTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKNQAVTEKVGEREEPTERSSPTECKYYQRSGGCKFGKACKFNHTRGKSSTAPILELNFLGLPIRLGEKECPYYMRTGSCKFGANCRFNHPDPTDVGGCDPPSGYGNGGSVSLQGVSQSSVPSWSSPSTLNETSFVPMMLSPTQGVSPQSSDWNGYQASVYLSERSMHPSSTYVMNNPAIETYMHHQKQIPVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPDSPSLMMMPGLGQQSYSNSASVEVARMGGSAGATDATIQQSV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04101 552 ProSiteProfiles Zinc finger C3H1-type profile. 438 466 IPR000571 GO:0046872
Rops2g04101 552 SUPERFAMILY CCCH zinc finger 443 467 IPR036855 GO:0046872
Rops2g04101 552 MobiDBLite consensus disorder prediction 76 94 - -
Rops2g04101 552 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g04101 552 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Rops2g04101 552 Gene3D - 426 513 - -
Rops2g04101 552 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Rops2g04101 552 SMART c3hfinal6 484 511 IPR000571 GO:0046872
Rops2g04101 552 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Rops2g04101 552 SMART c3hfinal6 212 239 IPR000571 GO:0046872
Rops2g04101 552 SMART c3hfinal6 438 465 IPR000571 GO:0046872
Rops2g04101 552 SUPERFAMILY CCCH zinc finger 306 332 IPR036855 GO:0046872
Rops2g04101 552 Gene3D - 177 250 - -
Rops2g04101 552 ProSiteProfiles Zinc finger C3H1-type profile. 484 512 IPR000571 GO:0046872
Rops2g04101 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 331 IPR000571 GO:0046872
Rops2g04101 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 238 IPR000571 GO:0046872
Rops2g04101 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 440 465 IPR000571 GO:0046872
Rops2g04101 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 486 510 IPR000571 GO:0046872
Rops2g04101 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 284 IPR000571 GO:0046872
Rops2g04101 552 SUPERFAMILY CCCH zinc finger 211 240 IPR036855 GO:0046872
Rops2g04101 552 MobiDBLite consensus disorder prediction 61 99 - -
Rops2g04101 552 SUPERFAMILY CCCH zinc finger 262 287 IPR036855 GO:0046872
Rops2g04101 552 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Rops2g04101 552 ProSiteProfiles Zinc finger C3H1-type profile. 212 240 IPR000571 GO:0046872
Rops2g04101 552 MobiDBLite consensus disorder prediction 163 208 - -
Rops2g04101 552 MobiDBLite consensus disorder prediction 1 43 - -
Rops2g04101 552 PANTHER PROTEIN PHOSPHATASE RELATED 159 533 - -
Rops2g04101 552 SUPERFAMILY CCCH zinc finger 482 509 IPR036855 GO:0046872
Rops2g04101 552 MobiDBLite consensus disorder prediction 184 208 - -
Rops2g04101 552 Gene3D - 254 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04101 Rops-Chr2 74577390 74583384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04101 434 535 C2H2 Transcription Factor Family AT3G02830 49.515 1.98e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g04101 zf-CCCH 1e-08 CL0537