Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04099 ATGCTTGATTCAGTACCCTCTTTCCAAGACTCCCTCGAGGCGCTTGAGGCTGATATTCAAAATGCCAATGTGCTGGCAGCTTCTATTCCAAGGGGCAAAGGCAGGGCTTGCCTTCAAATGAACCATTTTAATCTTTTCCGTGTAATTGTGTACAAGGTGCACACCAATGGAAAGCCAAATATCTATTCTTGTGGAAGGAAAGCAACCATAAGAGAGTTCTACTGTGTTATATTACCTTCCCTCCAGCGCCTTCACAGTGATTTAGTAGATGCTGACATTACTCAAGGAAAAGTTCACAGCACCAATACGGTTATCAATAGTAGTGTTGTGGAGGATAACAGGAAGCTTTTTGATTTGGACTCGGATAGAGAAAATGAGTGTGGTATCTGCTTAGAGTCTTGCACCAAAATGGTTTTGCCTAATTGCTGCCATGCTATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCCGAGGAAGTTTAAAAAGAATTAACTCGGGGGATTTGTGGGTTCTAACAAGCAGTAGTGAAGTGATTGATGCGCAAACCATATACAGAGAAGATATGTTGCGTCTCTATCTCTTTGTAAACAGCCTGCCAGAATATATCCCAGATGATCTTTTCTCTATGTAG 654 0.4128 MLDSVPSFQDSLEALEADIQNANVLAASIPRGKGRACLQMNHFNLFRVIVYKVHTNGKPNIYSCGRKATIREFYCVILPSLQRLHSDLVDADITQGKVHSTNTVINSSVVEDNRKLFDLDSDRENECGICLESCTKMVLPNCCHAMCINCYNDWNTRSESCPFCRGSLKRINSGDLWVLTSSSEVIDAQTIYREDMLRLYLFVNSLPEYIPDDLFSM* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04099 217 Pfam Ring finger domain 125 165 IPR001841 -
Rops2g04099 217 SUPERFAMILY RING/U-box 117 170 - -
Rops2g04099 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 174 IPR013083 -
Rops2g04099 217 FunFam RING/U-box superfamily protein 110 174 - -
Rops2g04099 217 ProSiteProfiles Zinc finger RING-type profile. 127 165 IPR001841 -
Rops2g04099 217 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Rops2g04099 217 PANTHER RING FINGER PROTEIN 41, 151 45 215 - -
Rops2g04099 217 SMART ring_2 127 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04099 Rops-Chr2 74547004 74548388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04099 126 203 C3H Transcription Factor Family AT2G20030 35.294 5.01e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04099 - - cave:132171115 296.589