Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04092 ATGCTGAAAATTGCTACTCAGAATGCGGAGAATTTGTCTTCATCGCCGAAATCCCCATCGTCATTGCTCTCTGAACATCATCATCATCATATAAAAGCCCCTGCTGGTGGTAAGGCGCAAACCGCTGGGATAGCTGTGAGGCATGTGCGCCGCTCACACTCTGGAAAGTATGTCCGTGTGAAGAAGGATGGTGCTGGTGGTAAGGGCACTTGGGGAAAATTGCTTGACACAGATGTTGTATCTCACATAGACCGGAATGATCCAAATTATGACAGCGGCGAGGAACCCTATCAGCTGGTTGGATCTACTGTTACAGACCCTTTAGACGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATACTTCAGTAATGGGGATGTGGAATTGGCAGCATCTGACCTCAAAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGAGGCTTGTCTCCATGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTACTTTCAGCGTTGTATGCTGATGTCATTAGTCCTGCCCAGATTAGGGACGGATTTTTTATGCTGATTGAATCTGCTGATGATCTTGCAGTGGATATACTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCATTTCTTGCCAGGGCAAGAAAGGCTCTTTCAGAATCTTCCAAGGGAGTTCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGCAGCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATAGCCGATTTACTTAGAGAATATGTGGAGAGTGGTGACACATTGGAAGCCTGCAGGTGCATACGTGAGTTGGGGGTTTCATTCTTCCATCATGAGGTTGTGAAAAGGGCTCTAGTACTTGCTATGGAGATTCGTTCTGCAGAAGAACCTCTAATGTTGAAGCTGTTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGTCAAATGTTGAAAGGATTTTCTCGTTTGGCAGAAGGCCTAGATGATCTTGCACTGGATATTCCATCAGCTAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCATTTACTGATCCTGCTAGTGAAGATGGGGAAGTTCAAGATGAAGATGAGAAGGTGAAGAAGTACAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCTGCATATAACCCAATATTTTTGAAGAAGCTAATAACTCTTGCTATGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCTTGTTATCTGCTCTTCATATAGAGATCTTTTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAGAGTGCAGAAGATACAGCACTGGATATACTGGATGCTTCAAATGAGCTTGCTCTATTCTTAGCTCGGGCTGTGATTGATGATGTACTTGTTCCATTGAATTTGGAAGAAATTGGCAGCAGATTACCACCAAAGTGCAGCGGTAGTGAAACTGTGCGTATGGCTCGATCACTCATTGCTGCTCGTCATGCTGGTGAAAGGCTATTGAGATGCTGGGGTGGAGGGACTGGATGGGCTGTGGAGGATGCCAAGGACAAGATCATGAAGCTCCTGGAGGAGTACGAAAGTGGCGGGGTTGTGAGTGAAGCATGCCAGTGTATTCGTGACCTGGGAATGCCTTTCTTTAACCATGAGGTGGTGAAGAAAGCTTTGGTCATGGCCATGGAGAAGAAGAATGATAGGATGCTAGATCTGATGCAGGAGTGCTTCAGTGAAGGCCTGATCACCATCAATCAGATGACTAAAGGGTTCACCCGAATTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAATGCTAAGGAAAAATTTGGGTTCTATGTGGAGCATGCCCAGACCAAAGGCTGGCTTCTACCATCATTTGATTCATCAGCCACAGATGTCTAA 2079 0.4459 MLKIATQNAENLSSSPKSPSSLLSEHHHHHIKAPAGGKAQTAGIAVRHVRRSHSGKYVRVKKDGAGGKGTWGKLLDTDVVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELAASDLKELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALSESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEEPLMLKLLKEAAEEGLISSSQMLKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFTDPASEDGEVQDEDEKVKKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPAYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLVPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLMQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQTKGWLLPSFDSSATDV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04092 692 ProSiteProfiles MI domain profile. 409 530 IPR003891 -
Rops2g04092 692 ProSiteProfiles MI domain profile. 274 396 IPR003891 -
Rops2g04092 692 MobiDBLite consensus disorder prediction 1 42 - -
Rops2g04092 692 FunFam Programmed cell death protein 4 260 397 - -
Rops2g04092 692 FunFam programmed cell death protein 4 102 253 - -
Rops2g04092 692 SUPERFAMILY ARM repeat 271 394 IPR016024 -
Rops2g04092 692 Gene3D - 103 252 - -
Rops2g04092 692 Gene3D - 400 552 - -
Rops2g04092 692 SUPERFAMILY ARM repeat 569 687 IPR016024 -
Rops2g04092 692 PANTHER PROGRAMMED CELL DEATH 4 8 686 IPR039778 GO:0045892
Rops2g04092 692 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04092 692 FunFam programmed cell death protein 4 399 553 - -
Rops2g04092 692 SUPERFAMILY ARM repeat 108 268 IPR016024 -
Rops2g04092 692 SMART ma3_7 410 521 IPR003891 -
Rops2g04092 692 SMART ma3_7 573 682 IPR003891 -
Rops2g04092 692 SMART ma3_7 111 222 IPR003891 -
Rops2g04092 692 SMART ma3_7 275 387 IPR003891 -
Rops2g04092 692 ProSiteProfiles MI domain profile. 110 231 IPR003891 -
Rops2g04092 692 Gene3D - 560 689 - -
Rops2g04092 692 Gene3D - 261 395 - -
Rops2g04092 692 ProSiteProfiles MI domain profile. 572 691 IPR003891 -
Rops2g04092 692 SUPERFAMILY ARM repeat 406 565 IPR016024 -
Rops2g04092 692 Pfam MA3 domain 574 681 IPR003891 -
Rops2g04092 692 Pfam MA3 domain 411 520 IPR003891 -
Rops2g04092 692 Pfam MA3 domain 111 222 IPR003891 -
Rops2g04092 692 Pfam MA3 domain 275 387 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04092 Rops-Chr2 74471683 74476904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04092 576 672 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 1.48e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04092 - - gmx:100784244 1206.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04092 2 74471683 74476904 Rops2g04092 2 74471683 74476904 ECH
Rops2g04092 2 74471683 74476904 Rops10g00748 10 17850435 17854289 PCT