Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04091 ATGGATGGCCGGAGGCATTCTGTTGATGTTCCTATTTCCAAAACTCTTGTAGCACTGAGGAGAGTCAGGTCATTGAGGGATCCATCAACTAATGGTATTAGCAAGCTCTCTCCTTTGATTGATAATGCACATTGGGAAAATGCTTCGGGTAATGGGATTTCTCTGAGATTCCTGAATGCTTCTCATGTATGTCTTTCTGATGATAATGGTTTTCCAAGATCAAAGAATTTGGATTTTAAGGGTCAAAGAGAGCAGGATACTACTGATTTTGAATTGGACTGTCGCCTGTTGAACTCTAAGATGAACTATTGTGGGATCTCATGTCAGGAATGGCAACATGATGATGATGAACTAGTTTACTCTAATCATACGCAGCATGGCTTTTCAGGAAATAAATCTCCAGATGAAAGCTGTTGTAGCAACCATGGAGCTAGAGGATTGGATTTGGCTTCCATAATGCCTCCTAGTAATCATTTGAAGGATGAGGAATCGTGCTATTTGTCAAATGCCTTATCATCACAATCAGGGAGAATAGATTACTCAAAGTCAACCAGAAAATCACTACGCAAGAATCAAGTGAAACCATCTGAAGTGATGGGTGATAATGCAAGCCATGTAGGGAGTCTATGCCTTTCTGTTCATGATGCTTTCTCAGCTCATAGTGCTTCAGCACATATAACTCAAGATATTGATGTTTTAGTTAATCAACATGGATGTGGAATAAGCTGTTGTTGGTCCAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAAGAGAAGACCTTCCCTTGATATTGCAGCATGTTAATGAGACAGATCTTCAGGGTCATAGAAGCATGAGACACATTGGTGGGGAAATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCAAAATCTTTTAGTGATTTGGTTGGACAAAATATGGTAGGAAAGTCTCTTTTGAGTGCCATTTCTAAAGGAAGGATTACATCATTCTATATCTTCCATGGTCCCCGTGGCACAGGCAAGACCTCTGCGGCGAGGATATTTGCTGCTGCACTGAATTGCCTTTCCCTTGAGGAGCAAAGGCCGTGTGGACTGTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAAAAGTAAAGATGTTAAGGAAGTGGATTCTTTGACAATCAATCGTGCAGACAAGGTAAAATCCCTTGTTAAGAATGCTTGCACCCCTCCAGTTTCCTCACGTTTTAAGGTCTTCATTATTGAAGAGTGCCATTTATTGCATGGGGAAACATGGGCAAGTCTTTTGAATAGCCTAGAGAATGTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTTGTTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGTGTTGAAGAAGGTCTTGAATCTGAACAGGATGCTTTAGATTTTATTGCTACTAAATCCCATGGTTCCCTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAGCTTACTGGGATCATCTCTGATGATGAATTGCTTGATTTGCTGGACCTGGCTTTGTCTTCTGACACTTCAAATACAGTTATAAGGGCCCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAGCTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAAACCAGCAGGAGATTTTCTGGTAGACATACCTTAGCGGAGGCAGACCTGCAGAAACTTAATCATGCTTTAAGAATACTTTCTGAAACAGAGAAGCAGTTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGCTAAGCTCTGTAGAATATTCATCTTTGGATACCAATGATGCCAAGTTGTGTATGAGAGCTGCTTCCAAGAGAGATGGTGATCCATGCAGCACATCTTCTACAGGGGAGAGCTTGAAACATCTTGCTACAGGTCAGTGTGATGAGAAGTCATATAGATTAGGAGTGCAGGAGGATCATAAAGGGACATTGGATTCCATATGGCATAAAACTACAGAGATATGTCAATCTAACAAGCTCAAGACTTTTCTTAGGAAGCAGGGGAAGTTGTCTTCAGTTTGTGTTAATCAAGGTCTTGCAGTTGTCGAGTTGAAGTTCCACCATAGTGACTATGTAACTAAGGCTGAGAAGTCATGGAAACTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAATGTTGAGCTCAGAATCAATTATGTACCTTGTACTTCGGACTATAAGTATGCTAAATTGAAGAGGTCATTCAATTTCTTTAGTTGCTCCCGCAGAATTCTTTGGAAATCATTATCATCTGATGCACAAGGAAGTGGATCAGACTATGCTGATTACACCTCTCAAAAGCCCATGATGAAGGATCAAACTCTAACTTGTTCCTCTGATTGTGGATCTCGGGTGCCACCACTTGAGTCCTACCATGGAATGGACGTTGTAACAACTTTGAGAAGTTCTGAAGGGAATTTGCTAAGCTCAGGGAAAATAGTATTGAATAGGTCATGTCTAGAGACTCCAAGGATTTCTTTTTCTAGAGCTGATTCTCTCAAGGAAGGGGGATGCAATTATGAACATCTTGCTTCTTCAACCCTTGATTTAGATAATCAGTCTAAGTGCTTTCCTCGAACCCTCTGGCTTCATAAAAGGTTCTCTTCTTCATATGCATTACAAAAGAAGGATTTTGTTTTATCGATCCCTAAGTGCAAATGTTCTGAGACTTGTAGCTGTGATAAGGAGCCGTGTGTCTTTTCCCACGGCTCTTACAACTGCACCAAAGCTGCCGAGGAAAAGTAG 2934 0.4063 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNAHWENASGNGISLRFLNASHVCLSDDNGFPRSKNLDFKGQREQDTTDFELDCRLLNSKMNYCGISCQEWQHDDDELVYSNHTQHGFSGNKSPDESCCSNHGARGLDLASIMPPSNHLKDEESCYLSNALSSQSGRIDYSKSTRKSLRKNQVKPSEVMGDNASHVGSLCLSVHDAFSAHSASAHITQDIDVLVNQHGCGISCCWSKSPRFRESNHYSEREDLPLILQHVNETDLQGHRSMRHIGGEISPTLETPRSLSMKFRPKSFSDLVGQNMVGKSLLSAISKGRITSFYIFHGPRGTGKTSAARIFAAALNCLSLEEQRPCGLCRECVLFFSGKSKDVKEVDSLTINRADKVKSLVKNACTPPVSSRFKVFIIEECHLLHGETWASLLNSLENVSQHVVFVMITPCLDKLPRSAVSRAQRYHFAKIKDADIASRLEKICVEEGLESEQDALDFIATKSHGSLRDAEMMLDQLSLLGKKITISLVYELTGIISDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCELGGSETSRRFSGRHTLAEADLQKLNHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSLDTNDAKLCMRAASKRDGDPCSTSSTGESLKHLATGQCDEKSYRLGVQEDHKGTLDSIWHKTTEICQSNKLKTFLRKQGKLSSVCVNQGLAVVELKFHHSDYVTKAEKSWKLIASSLQFILGCNVELRINYVPCTSDYKYAKLKRSFNFFSCSRRILWKSLSSDAQGSGSDYADYTSQKPMMKDQTLTCSSDCGSRVPPLESYHGMDVVTTLRSSEGNLLSSGKIVLNRSCLETPRISFSRADSLKEGGCNYEHLASSTLDLDNQSKCFPRTLWLHKRFSSSYALQKKDFVLSIPKCKCSETCSCDKEPCVFSHGSYNCTKAAEEK* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04091 977 FunFam Protein STICHEL-like 1 isoform C 534 648 - -
Rops2g04091 977 CDD HLD_clamp_pol_III_gamma_tau 470 533 IPR045085 -
Rops2g04091 977 Gene3D - 471 532 - -
Rops2g04091 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 520 IPR027417 -
Rops2g04091 977 Gene3D - 291 468 IPR027417 -
Rops2g04091 977 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 298 709 - -
Rops2g04091 977 NCBIfam DNA polymerase III subunit gamma/tau 297 644 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Rops2g04091 977 FunFam DNA polymerase III subunit gamma/tau 471 533 - -
Rops2g04091 977 SUPERFAMILY post-AAA+ oligomerization domain-like 540 642 IPR008921 GO:0003677|GO:0006260
Rops2g04091 977 Gene3D - 533 648 - -
Rops2g04091 977 Pfam DNA polymerase III, delta subunit 313 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04091 Rops-Chr2 74457727 74463376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04091 288 585 Core DNA Replication Machinery Family AT1G21690 24.172 2.34e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04091 - - pcin:129308301 1249.19