Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04090 ATGACAACTACTTCACTCTCTTTGCTCTTCTTCCTCTTCTCTCTCCTCACTCTAACCCTCATTTCCTCTTCACCAGTTCAAAACCCTGAATTGGTAGTACAAGAGGTTAACAGGAAAATCAATGCCTCTGTAGCTAGGAGGAATTTGGGGTACCTCTCCTGTGGGACTGGTAACCCCATTGATGATTGTTGGAGGTGTGACCCCAACTGGGAGAAGAACAGGCAAAAGCTAGCAGATTGTGCAATTGGTTTTGGCAAGAATGCCGTTGGTGGAAAGGATGGTAAGATTTATGTTGTCACCGATTCCGGCGATGATGATCCGGTGAACCCGAAACCAGGGACACTCCGTTATGCAGTGATTCAAGATGAGCCATTGTGGATCATATTTGAAAGAGACATGGTGATTCAGCTGAAAGAAGAGCTCCTAATGAACTCTTTCAAGACTATTGATGGAAGAGGTGCTAGTGTGCACATTTCTGGTGGTCCATGCATTACAATTCAGTATGTTACCAATGTTATAATACATGGGATTCATATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCACTATGGCTGGAGGACCGTATCTGATGGTGATGGTGTGTCCATCTTTGGAGGAAGTCACATATGGGTGGACCATTGTTCCTTGTCTAACTGCAATGATGGCTTGATTGACGCCATACATGGGTCCACAGCAATTACCATATCCAACAATTACATGACCCACCATGATAAGGTCATGCTCTTGGGTCACAGTGACACATTCACACAAGACAAGAACATGCAGGTCACTATAGCTTTCAACCACTTTGGAGAAGGCCTAGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAATAGATTTGCTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAAGGGTGGAATTGGAGGTCAGAAGGAGACTTGTTGGTGAATGGTGCTTTTTTCACAGCATCAGGGGCAGGAGCCTCTTCTAGCTATGCAAGAGCTTCTAGCTTAAGTGCAAGACCATCTTCTCTAGTGGGTCCCATAACCACTGGTGCTGGTGCAATCAATTGTAGGAAGGGTTCTCGTTGCTGA 1221 0.4578 MTTTSLSLLFFLFSLLTLTLISSSPVQNPELVVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQKLADCAIGFGKNAVGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFERDMVIQLKEELLMNSFKTIDGRGASVHISGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGPITTGAGAINCRKGSRC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Rops2g04090 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Rops2g04090 406 SUPERFAMILY Pectin lyase-like 34 400 IPR011050 -
Rops2g04090 406 Gene3D - 57 399 IPR012334 -
Rops2g04090 406 SMART amb_all 132 329 IPR002022 -
Rops2g04090 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
Rops2g04090 406 Pfam Pectate lyase 143 323 IPR002022 -
Rops2g04090 406 FunFam Pectate lyase 57 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04090 Rops-Chr2 74425962 74427995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04090 5 406 Polysaccharide Lyase AT5G63180 81.436 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04090 K01728 - gmx:100101868 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04090 2 74425962 74427995 Rops10g00745 10 17797537 17800021 ECH
Rops11g03776 11 71446780 71448787 Rops2g04090 2 74425962 74427995 ECH
Rops10g00745 10 17797537 17800021 Rops2g04090 2 74425962 74427995 ECH
Rops2g04090 2 74425962 74427995 Rops2g04090 2 74425962 74427995 ECH
Rops2g04090 2 74425962 74427995 Rops10g00745 10 17797537 17800021 PCT