Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04081 ATGTCTATCACAACCATGCCTGCATTCAAGTCCCTCACAGTGGCAGAATCTTGCCTATTCTCTCAGCCATCACTCTTCTACAACAAAGCCAAATTCTCAATTATCTCAAATTCTTTTAAGCCCATCAAGCTTCAATTGCCATGTTCCAACTCTTCACTCTTTTCACCCTCTCTCTACCTAAGAAGGAGGAGAACCCACCATTCTTCTCTGCTCACATTTGTAGCTCAGACATCAGATTGGGCTCAACAAGAAGGAAAAGAAGAGGAAGAAGATGGAGCTGTGTGGGAGAACCAAGATGAACCCACATGGGGAAATGAAGATGTTGATGTTAATGAAACCGAAGGAAATGAGGGCGGTGAAGATGGGATTTTTGAGGAGGGGGGTTTTGCTGAACCATCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCTTTTGATGTTGACAGTGAGAAATTGGCTATGCTTTTTGAACAGGCTGGGACTGTGGAGGTTGCTGAGGTAATTTATAATAGGGACACTGACAGAAGTCGTGGGTTTGGATTTGTAACCATGAGTACAGCTGAAGAAGTTGAGAAGGCTGTGGAGAAGTTCAGTGGCTTTGAATTAGATGGAAGAATGTTGACTGTTAATAAGGCTGCTCCAAGAGGAGCACAGCCAGAACGTCCACCACGTTCCTTTGATTCCGCTCCAAGAATCTATGTTGGTAACCTGCCATGGGATGTTGACAATGCTCGGCTGGAGCAAGTTTTCAGCGAACATGGCAAGGTTGAGAATGTTCGGATAGTCTATGACAGAGAGACTGGTCGGTCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGGACAATCAGAGTGAATGTTGCTGAGGAAAAGCCCAGGCGTAGCTCCTTTTGA 948 0.4515 MSITTMPAFKSLTVAESCLFSQPSLFYNKAKFSIISNSFKPIKLQLPCSNSSLFSPSLYLRRRRTHHSSLLTFVAQTSDWAQQEGKEEEEDGAVWENQDEPTWGNEDVDVNETEGNEGGEDGIFEEGGFAEPSEDLKIFVGNLPFDVDSEKLAMLFEQAGTVEVAEVIYNRDTDRSRGFGFVTMSTAEEVEKAVEKFSGFELDGRMLTVNKAAPRGAQPERPPRSFDSAPRIYVGNLPWDVDNARLEQVFSEHGKVENVRIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRTIRVNVAEEKPRRSSF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04081 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Rops2g04081 315 MobiDBLite consensus disorder prediction 81 123 - -
Rops2g04081 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 302 IPR000504 GO:0003723
Rops2g04081 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
Rops2g04081 315 PANTHER OS02G0815200 PROTEIN 40 311 - -
Rops2g04081 315 CDD RRM2_NsCP33_like 231 306 - -
Rops2g04081 315 SUPERFAMILY RNA-binding domain, RBD 222 313 IPR035979 GO:0003676
Rops2g04081 315 SUPERFAMILY RNA-binding domain, RBD 133 227 IPR035979 GO:0003676
Rops2g04081 315 MobiDBLite consensus disorder prediction 84 121 - -
Rops2g04081 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 308 IPR000504 GO:0003723
Rops2g04081 315 Gene3D - 219 314 IPR012677 -
Rops2g04081 315 Gene3D - 74 218 IPR012677 -
Rops2g04081 315 SMART rrm1_1 137 210 IPR000504 GO:0003723
Rops2g04081 315 SMART rrm1_1 231 304 IPR000504 GO:0003723
Rops2g04081 315 FunFam 31 kDa ribonucleoprotein, chloroplastic 220 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04081 Rops-Chr2 74302383 74304988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04081 125 312 Eukaryotic Initiation Factors Gene Family AT3G16380 33.838 2.03e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04081 - - gmx:100811487 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04081 2 74302383 74304988 Rops10g00731 10 17658040 17660960 ECH
Rops2g04081 2 74302383 74304988 Rops2g04081 2 74302383 74304988 ECH
Rops2g04081 2 74302383 74304988 Rops10g00731 10 17658040 17660960 PCT