Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04073 ATGGATCGGCGTCCAAGAAAGAGAGCGAGGTTGGGCTGGGACATTCCTGAGGTCCCTCCTAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGAATTTTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACGTACCATTAGCACTCTATTTGTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCTCGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAAATCCATAGCAAAATGGGTGAAGGAACTTTCGGACAGGTCTTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCTATAAAAATTGTCCGGGGGATAAAGAAGTATCGAGAAGCTGCCATGATAGAAGTTGAGATGTTGCAACAGCTTGGGAAACATGATAAAGGAGGCAATTGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGACCTTGTCCGTGAGATTGGAAGACAACTGTTGGAATGTATTGCATTCATGCATGATTTACGCATGATCCATACCGACTTGAAGCCCGAAAACATACTTCTTGTATCACCAGAGTATGTAAAAGTTCCTGACTATAAGAGTTCATCTAGATCACCAAACTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGACATTATAGAGCACCGGAAGTTATCCTTGGACTTGGCTGGAGTTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAATTATGCACGGGTGAAGCTTTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCGATGATGGAGAGGGTACTTGGTCCACTACCACAGCACATGTTGAAGAGACTTGACCGACATGCCGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCAGAGGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTAATGAAGCTTCCTAGGCTACAGAACCTTATCATGCAACATGTTGATCATTCGGCTGGTGATCTGATACATCTATTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTGCAGCCAAAGAAGCTCTGAGACATTCTTTCTTTACGAGAGATCACCTTAGGAGATGA 1257 0.4312 MDRRPRKRARLGWDIPEVPPKAQVGLFCGQDVGNFSSYAPSRGPSERTISTLFVKGVARNGSPPRRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEVEMLQQLGKHDKGGNCCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPNSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRLDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLAAKEALRHSFFTRDHLRR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04073 418 ProSiteProfiles Protein kinase domain profile. 86 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04073 418 CDD PKc_CLK 73 411 - -
Rops2g04073 418 Pfam Protein kinase domain 86 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04073 418 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
Rops2g04073 418 FunFam Serine/threonine-protein kinase AFC2 162 411 - -
Rops2g04073 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Rops2g04073 418 SMART serkin_6 86 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04073 418 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 414 - -
Rops2g04073 418 SUPERFAMILY Protein kinase-like (PK-like) 73 415 IPR011009 -
Rops2g04073 418 Gene3D Transferase(Phosphotransferase) domain 1 140 411 - -
Rops2g04073 418 FunFam Serine/threonine-protein kinase AFC2 73 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04073 Rops-Chr2 74220914 74224884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04073 91 411 Core Cell Cycle Gene Families AT1G76540 25.000 6.35e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Rops2g04073 Pkinase 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04073 K08287 - gmx:100804452 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04073 2 74220914 74224884 Rops2g04073 2 74220914 74224884 ECH