Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04054 ATGAACCCCTACGACAATAGATTCTCCGACGCCACTTCTTTTCGCGGCCGTCGCAGTGATCTGGTTGGACCTATGCCGCCGTCTGTTATCGGCCGCGGCGGTGGTGCTCCTTATGCCGTCCCTAGACCCAACGGTTTTGGATCCGCACCCGTTACCCCGATTCCGCCCTTTGTGCCTCCTCCCAGTGGCTTTGACATAGGCCGAGGAGGTGGTTTTGGGGGTAGAATAGTCAATGGTCGCGTGGGTGATAGAAAATATGACATAGGCCGTCCCGGTGGTGGTGGTGGTGGTGGTGGTGGAAGAGGTCGTGGCGGTGGTAGAACCGGAACTCACGGTTTTAGGGCTTCCGGTAGCGGAGGGAGTGGAGGCAGAGGTTCTGGGTTTGGAGGTAGACATGGTGGTGGATCTTCTAGGGATGAATTGAATAACATTGCACTCCCCAAGCAAGATTTTAGGAATTTGGTCCCTTTCGAGAAGAATTTCTACGTTGAGAGTCCTTCTGTTAAGGCCATGTCTGATCATCAAGTTATGCTTTACCGCTCAAGTAGGGAGATCACTGTCCAAGGGCATGATGTGCCAAGACCTATTCGGATGTTTCATGAGGCAAATTTTCCTGATTACTGCCTTGAGGTCATTGCCAAACTGGGTTTTGTTGAGCCCACTGCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGATGGGTAGAGATTTAGTTGGCATTGCTGAGACTGGCTCCGGTAAAACTTTGGCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGACTGGTACAAGGTCAAGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTGTGAAATTTGGATCACGAGCAAATATTAGAACTACATGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATTCGTGATCTTAAAAGAGGCGTTGAGATTGTTATTGCTACTCCTGGTCGTCTAATTGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACTTACCTTGTCCTGGATGAAGCCGATCGAATGTTGGACATGGGTTTTGAACCTCAGATACGAAAAATTGTAAACCAGATTCGACCAGATAGGCAGACATTATATTGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATATAAGGTAATTATTGGATCACAAGATCTGAAAGCAAATCAATCTATTAATCAAGTTGTTGAAGTTGTAACCGACATGGAGAAATACAATAGATTGATCAGACTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGACCAAGTTACAAGACAATTGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTTCTGGCTGAATTTAAGAGTGGCAGAAGTTCAATAATGACTGCTACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACATTTTTTACTCATGCCAATGCCAAGTATGCTAGGGATCTAATTAAGATTTTACAAGATGCTGGTCATGCTGTGAGTCCTGCGCTGTCTGCATTGGCTCGATCTGCTGGTTCTGGTCATTTTGGATCAGGGGGAAGCTTTCGCTCAAGAGGACGAGGAGGCTTTGGCAATCGGGGTTCAAAATCAGGCTCCAATGCCATTCCTCTAGGTTCTAAGAGGCCTTGGCAGTGCCTGTAG 1866 0.4711 MNPYDNRFSDATSFRGRRSDLVGPMPPSVIGRGGGAPYAVPRPNGFGSAPVTPIPPFVPPPSGFDIGRGGGFGGRIVNGRVGDRKYDIGRPGGGGGGGGGRGRGGGRTGTHGFRASGSGGSGGRGSGFGGRHGGGSSRDELNNIALPKQDFRNLVPFEKNFYVESPSVKAMSDHQVMLYRSSREITVQGHDVPRPIRMFHEANFPDYCLEVIAKLGFVEPTAIQAQGWPMALMGRDLVGIAETGSGKTLAYLLPALVHVNAQPRLVQGQGPIVLVLAPTRELAVQIQEEAVKFGSRANIRTTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSINQVVEVVTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSSIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKYARDLIKILQDAGHAVSPALSALARSAGSGHFGSGGSFRSRGRGGFGNRGSKSGSNAIPLGSKRPWQCL* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04054 621 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 403 IPR014001 -
Rops2g04054 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 557 IPR027417 -
Rops2g04054 621 MobiDBLite consensus disorder prediction 1 29 - -
Rops2g04054 621 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 176 576 - -
Rops2g04054 621 FunFam ATP-dependent RNA helicase RhlB 407 580 - -
Rops2g04054 621 Pfam Helicase conserved C-terminal domain 427 537 IPR001650 -
Rops2g04054 621 Gene3D - 170 409 IPR027417 -
Rops2g04054 621 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 197 225 IPR014014 GO:0003724
Rops2g04054 621 MobiDBLite consensus disorder prediction 582 621 - -
Rops2g04054 621 FunFam probable ATP-dependent RNA helicase DDX17 159 406 - -
Rops2g04054 621 CDD DEADc_DDX5_DDX17 209 403 - -
Rops2g04054 621 SMART ultradead3 216 419 IPR014001 -
Rops2g04054 621 MobiDBLite consensus disorder prediction 83 138 - -
Rops2g04054 621 CDD SF2_C_DEAD 416 546 - -
Rops2g04054 621 SMART helicmild6 456 537 IPR001650 -
Rops2g04054 621 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 349 357 IPR000629 -
Rops2g04054 621 Pfam DEAD/DEAH box helicase 221 392 IPR011545 GO:0003676|GO:0005524
Rops2g04054 621 Gene3D - 410 576 IPR027417 -
Rops2g04054 621 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 431 576 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04054 Rops-Chr2 73969391 73973710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04054 195 557 Eukaryotic Initiation Factors Gene Family AT3G19760 36.264 4.75e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04054 K12823 - gmx:100817092 924.85