Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04048 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACCAGATTTGGTGTTGGGTGCTGGAGTTCAGTTCCCAAACTAGCTGGACTGCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCACAGCAGGAGGAGGATCTTATAATGAATCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAGAACTTCTGGAATTCATGTTTAAAGAAGAAGCTACTGAAGCAAGGGATTGACCCAACTACGCACAAGCCCCTTACTGAAGCTAATGTACAGGAAGAGAAGAAAAGCACAGAGACAACACCCATGCAAATACCATTGTCTCAAGGGCCTTCAGCTACATCAACCTTAGCTTCATCACAGGGGTCAACACTTCTAATAAATGATTCTAATTACTATGATGGCGGTTTAACAGAAGCTTCAAGAGATATTTTCATGACCAAAACAGCATTGGACCCCTTGTCCTTGTCTTTCTATGATTTCCAAATAGGTGTTGCTCAATCTGGTTTTAACTTACCTGAGAGTCATTATCACACAAGCCTTAAGCCATCTGATGAGAACCAGTTTGGATTGAATTCAGGCTATGTATTCTCTTCAATGCCAACTCTAACCAATTCGGATCATGGGAACGTGTCGGTGACTGAGTTTTCTGACAACAATTCAGCTTCCAAAATCAGTTCCTTGTTCATGAATGATCAGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCACTATTTACCCAGGAGGAGGGTGTCAAATGAGAAGCATGATGGAAAATGCAGGGTTCTCTTGGGAAGGTGATAACAAATTGGACCCTTTGTTTCAGTTCCAAGTCAATGCCATAAAATCTGAGGATTTCAGGACAAGTTCATGGGAAGAAGGGCAGCTGCAGACTCATAATTCAATAGATTTCACTAGCTATCCGTTAACGTCACTGTCAGAAGATCTAACAGGAGCAAATTTTGATGTTTTCCAGCATATATGA 1119 0.4111 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIMNLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEANVQEEKKSTETTPMQIPLSQGPSATSTLASSQGSTLLINDSNYYDGGLTEASRDIFMTKTALDPLSLSFYDFQIGVAQSGFNLPESHYHTSLKPSDENQFGLNSGYVFSSMPTLTNSDHGNVSVTEFSDNNSASKISSLFMNDQVKESSSNSSNMSTIYPGGGCQMRSMMENAGFSWEGDNKLDPLFQFQVNAIKSEDFRTSSWEEGQLQTHNSIDFTSYPLTSLSEDLTGANFDVFQHI* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04048 372 Gene3D - 11 67 - -
Rops2g04048 372 FunFam Transcription factor MYB86 69 137 - -
Rops2g04048 372 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops2g04048 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g04048 372 CDD SANT 70 109 IPR001005 -
Rops2g04048 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g04048 372 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g04048 372 SMART sant 66 114 IPR001005 -
Rops2g04048 372 SMART sant 13 63 IPR001005 -
Rops2g04048 372 CDD SANT 17 61 IPR001005 -
Rops2g04048 372 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g04048 372 FunFam MYB transcription factor 11 67 - -
Rops2g04048 372 MobiDBLite consensus disorder prediction 139 157 - -
Rops2g04048 372 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops2g04048 372 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g04048 372 MobiDBLite consensus disorder prediction 133 157 - -
Rops2g04048 372 PANTHER MYB DOMAIN PROTEIN 55 1 302 - -
Rops2g04048 372 Gene3D - 69 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04048 Rops-Chr2 73927413 73929068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04048 1 140 MYB Transcription Factor Family AT4G01680 80.000 3.46e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04048 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04048 K09422 - gmx:100811140 666.766