Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04045 ATGGCATCATCCAGCTCTTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTTGCAAACGTCCACAAGATTTTTGGTGCTAGCAATGTGACTAAGCTCCTTAATGAACTCCTTCCTCACCAGAGGGAGGATGCAGTGAACTCCCTTGCCTATGAAGCAGAAGCCCGCGTCAGGGACCCAGTTTATGGCTGTGTAGGTGCCATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTCCAAAAGGACCTTGATGCTGCTAACGCTGATCTGCTTCGCTATTCCTTCCCTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGCAATGACTTCAGTTCAACAAATGCCTCAAAGGCAGTTCAGTGCAAGAATTGGCAATGAAGGAAGTGGGTTTTACCGGCAATCTCCTACTACTTACTCTCTTCCTTATTCTCTTCCATGGACTGATACCTCCTCAGAGGACATCAGTGAAGGAGGAGGAAATAATTTGTGA 552 0.471 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKDLDAANADLLRYSFPDIPPASLSVPPAMTSVQQMPQRQFSARIGNEGSGFYRQSPTTYSLPYSLPWTDTSSEDISEGGGNNL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04045 183 Coils Coil 89 109 - -
Rops2g04045 183 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Rops2g04045 183 MobiDBLite consensus disorder prediction 164 183 - -
Rops2g04045 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 131 - -
Rops2g04045 183 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04045 Rops-Chr2 73853283 73853834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04045 1 115 AS2 family AT5G63090 92.241 2.23e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g04045 LOB 5.7e-42 No_clan