Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04037 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTACTTCCATACCATTTTTTTATAGCTGTTGCTGTAAACCAACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACCCTGAAGGGATCCCTGGAGGTATTGAGTAACTGGGACCCAATTGAAGATACACCATGTAGCTGGTTTGGAGTCAGTTGCGACTTGAAGAATGAAGTAGTACAATTAGATCTGAGATATGTGGATTTGCTTGGGACGGTTCCTACCAATTTCACCTCATTGCTTTCCTTGAACAGTCTCATCTTAACCGGAACCAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAAACTTGGCGAACTCAGCTACTTGGACTTGAGTGACAATGCCTTGAGTGGTGAAATCCCAAGTGAGCTCTGCTACTTGCCCAAACTTGAGGAACTTCATCTCAACTCCAACGAGCTGGTGGGGTCAATCCCAGTTGCAATTGGGAACCTCACAAAGTTGGAGCAGCTGATCTTATATGACAATCAATTGAGTGGTGAAATTCCAAGTACTATGGGCAACCTTGGGAACCTGCAAGTGATAAGAGCTGGAGGAAACAAGAACCTGGAAGGTCCTTTGCCACAAGAAATTGGCAACTGTTCCAATTTAGTCACGTTGGGATTAGCTGAAACAAGCATCTCAGGTTTTTTGCCACCAACTCTTGGCCTCCTGAAGAAGCTTGAAACAATTGCCATTTACACTTCTTTCCTCTCTGGCCAAATACCCCCTGAACTTGGAGATTGCACTGAGCTCCAAAACATTTATCTGTACGAGAATTCCCTTACTGGATCCATTCCGAGTAAATTGGGAAACCTTAGGAAGCTTCAAAACCTGCTGCTCTGGCAGAACAATTTAGTTGGCACAATCCCACCAGAGATTGGAAACTGTTACCAGTTACAAGTGATTGACGTGTCAATGAACTCAATAAGCGGAAGCATTCCCAAAAGTTTTGGGAGCTTGACATCGCTGCAAGAACTCCAAATGAGTGTGAACCAGATTTCGGGAGAGATTCCAAGAGAATTGGGGAACTGTCAGCAACTCACTCACGTGGAACTGGACAACAATCTAATAACAGGAACAATACCTTCCGAATTGGGAAACCTCGGGAATCTAACGTTGTTGTTCTTATGGCACAACAAGCTACAAGGTAACATACCCTCGTCCCTTTCTAATTGTCAAAACCTAGAGGCTATTGATCTGTCGCAGAATGGATTAACGGGTCCCATTCCAAAGGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTACTCTCTAACAATCTCTCCGGTGAAATCCCCACTCAGATTGGGAATTGTTCCTCTCTTATTCGCTTCAGAGCCAATAACAACACCATTAATGGGAACATCCCCTCGCAGATTGGGAATCTAAAAAATTTGAACTTTTTGGACCTGGGAAGCAATCGGATTTCTAGGGTAATCCTGGAGGAGATCTCCGGCAGCCGGAATCTCACATTTTTGGACTTGCATTCAAATTCCATCGCCGGAAGCTTGCCGGAAAGTCTGAGCCAGCTTGTTTCACTTCAATTTCTTGATGTCTCCGATAACATGATCGAAAGGTCGCTGAGTCCTACCCTTGGCTCGCTCGCCGCACTCACCAAACTCGTTCTCCGGAAGAATCGTATCTCCGGTTCAATTCCGAGTCGACTCAGTTCATGTGCAAAGCTGCAGTTGCTGGACCTCAGTAGCAACCAGTTTTCTGGAGATATCCCCGGTAGCATCGGCAACATTCCGGGGCTGGAAATAGCTCTGAAATTAAGCTGGAACCAACTCTCCGGCGAGATCCCTAGGGAGTTTTCAGGTTTGACGAAGCTCGGAGTGTTGGACATATCCCACAACCTTCTTGCCGGAAACCTTGAATATCTCGCGGGGCTTCAAAATCTCGTGGTCCTGAATATCTCGTACAACAAATTCTCCGGGCGCGTTCCGGACACGCCTTTCTTCGCGAAGCTTCCCCTGAGCGTGCTCACCGGGAACCCGTCTTTATGCTTCTCCGGCAACCAGTGCGGCGGCGAAAATGCAGGGAAATCTGGGAAACGGGGGAGGGAGGCGCGCGTGGCCATGGTGGTCCTGCTTTGCGCAGCGGTAGTGCTCCTCATGGCGGCGCTATACGTCATCGTCGCGGCAAAACGACGAGGGGACCATGAAAACGACCCGGACCTCGAAGGAAAAGACAGCGACGCGGACATGGCCCCACCTTGGGAGGTGACACTGTACCAAAAGCTCGACCTGTCAATGTCTGACGTAGCGAAATGCCTCACTGCTGGCAACGTCATCGGCCACGGTCGATCCGGCGTCGTTTATAGGGTCAATATGCCATCCACAGGATTGAACATCGCGGTTAAAAAGTTCAAGTCGTCGGAGAAATTCTCCGCGGCGGCGTTTTCGTCGGAGATTGCCACGCTGGCAAGAATACGGCACCGTAAAATCGTGCGGTTGTTGGGTTGGGGTGCGAACCGGAGAACAAAGTTACTGTTCTATGATTATTTACCCAACGGTAATTTGGATGCGCTGTTACACGAGGGGTGCACAGGATTAACGGACTGGGAGACGCGGCTCAAGATAGCACTCGGCGTTGCTGAGGGTTTGGCTTACTTGCACCATGATTGCGTCCCTGCTATCTTGCACAGGGACGTTAAGGCGCAGAATATTCTGTTAGGAGAAACATATGAACCTTGTTTAGCTGATTTTGGATTCGCTCGTTTCGTAGAAGAAGATCACGCTTCGTTTTCCCTTAGCCCACAATTCGCTGGTTCTTACGGCTACATTGCTCCTGAGTATGCTTGCATGCTTAAAATCACGGAGAAGAGTGATGTGTACAGCTTTGGGGTGGTCCTACTTGAGATAATAACTGGGAAAAGGCCCGTGGATCCATCATTCCCGGATGGACAACATGTTATTCAATGGGTTAGGGAGCACTTAAAGAGCAAGAAGGACCCAATTGAGGTTCTTGATTCCAAGCTTCAAGGCCATCCAGATACACAAATACAAGAGATGCTACAAGCACTTGGTATCTCTCTCTTGTGTACAAGTAATCGTGCAGAGGATCGACCCACAATGAAAGATGTTGCAGCATTATTAAGGGAAATTAGACATGATACTCCAGCAGGGGGTGAACCCCACAAGCCCAAAAGAACCGAAGCTTCGTCCTATTCATCATCCTCAGTGACCCCAGCTCAGTTGTTGCTCCTCCAATCCAATTCACATTCCTCATCACTTGCTTATTCTACTTCCTCAGCAGCAGCCTATGACTCACCAAGGAACCAATCATGA 3336 0.4781 MPVNPWTLFFLCISLLLPYHFFIAVAVNQQGEALLSWKRTLKGSLEVLSNWDPIEDTPCSWFGVSCDLKNEVVQLDLRYVDLLGTVPTNFTSLLSLNSLILTGTNLTGSIPKEIGKLGELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNELVGSIPVAIGNLTKLEQLILYDNQLSGEIPSTMGNLGNLQVIRAGGNKNLEGPLPQEIGNCSNLVTLGLAETSISGFLPPTLGLLKKLETIAIYTSFLSGQIPPELGDCTELQNIYLYENSLTGSIPSKLGNLRKLQNLLLWQNNLVGTIPPEIGNCYQLQVIDVSMNSISGSIPKSFGSLTSLQELQMSVNQISGEIPRELGNCQQLTHVELDNNLITGTIPSELGNLGNLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGEIPTQIGNCSSLIRFRANNNTINGNIPSQIGNLKNLNFLDLGSNRISRVILEEISGSRNLTFLDLHSNSIAGSLPESLSQLVSLQFLDVSDNMIERSLSPTLGSLAALTKLVLRKNRISGSIPSRLSSCAKLQLLDLSSNQFSGDIPGSIGNIPGLEIALKLSWNQLSGEIPREFSGLTKLGVLDISHNLLAGNLEYLAGLQNLVVLNISYNKFSGRVPDTPFFAKLPLSVLTGNPSLCFSGNQCGGENAGKSGKRGREARVAMVVLLCAAVVLLMAALYVIVAAKRRGDHENDPDLEGKDSDADMAPPWEVTLYQKLDLSMSDVAKCLTAGNVIGHGRSGVVYRVNMPSTGLNIAVKKFKSSEKFSAAAFSSEIATLARIRHRKIVRLLGWGANRRTKLLFYDYLPNGNLDALLHEGCTGLTDWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGETYEPCLADFGFARFVEEDHASFSLSPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDTPAGGEPHKPKRTEASSYSSSSVTPAQLLLLQSNSHSSSLAYSTSSAAAYDSPRNQS* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04037 1111 Gene3D Ribonuclease Inhibitor 137 234 IPR032675 -
Rops2g04037 1111 SUPERFAMILY RNI-like 75 396 - -
Rops2g04037 1111 Gene3D Ribonuclease Inhibitor 313 468 IPR032675 -
Rops2g04037 1111 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04037 1111 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 421 694 - -
Rops2g04037 1111 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1066 - -
Rops2g04037 1111 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Rops2g04037 1111 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04037 1111 Gene3D Ribonuclease Inhibitor 572 690 IPR032675 -
Rops2g04037 1111 SMART LRR_sd22_2 502 525 - -
Rops2g04037 1111 SMART LRR_sd22_2 117 149 - -
Rops2g04037 1111 SMART LRR_sd22_2 382 411 - -
Rops2g04037 1111 SMART LRR_sd22_2 262 288 - -
Rops2g04037 1111 SMART LRR_sd22_2 526 548 - -
Rops2g04037 1111 SMART LRR_sd22_2 623 645 - -
Rops2g04037 1111 SMART LRR_sd22_2 165 191 - -
Rops2g04037 1111 SMART LRR_sd22_2 478 501 - -
Rops2g04037 1111 ProSiteProfiles Protein kinase domain profile. 774 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04037 1111 Gene3D Transferase(Phosphotransferase) domain 1 851 1067 - -
Rops2g04037 1111 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Rops2g04037 1111 Gene3D Ribonuclease Inhibitor 469 571 IPR032675 -
Rops2g04037 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Rops2g04037 1111 SMART LRR_typ_2 165 189 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 550 574 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 382 406 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 430 454 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 117 139 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 478 502 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 526 549 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 141 164 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 334 358 IPR003591 -
Rops2g04037 1111 SMART LRR_typ_2 286 310 IPR003591 -
Rops2g04037 1111 MobiDBLite consensus disorder prediction 1053 1067 - -
Rops2g04037 1111 SUPERFAMILY RNI-like 316 663 - -
Rops2g04037 1111 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Rops2g04037 1111 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Rops2g04037 1111 Gene3D Ribonuclease Inhibitor 29 136 IPR032675 -
Rops2g04037 1111 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 409 1047 - -
Rops2g04037 1111 Pfam Leucine rich repeat 287 347 IPR001611 GO:0005515
Rops2g04037 1111 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Rops2g04037 1111 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 420 - -
Rops2g04037 1111 SUPERFAMILY Protein kinase-like (PK-like) 766 1049 IPR011009 -
Rops2g04037 1111 Gene3D Phosphorylase Kinase; domain 1 757 850 - -
Rops2g04037 1111 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Rops2g04037 1111 MobiDBLite consensus disorder prediction 1053 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04037 Rops-Chr2 73689954 73694498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04037 26 1101 Receptor kinase-like Gene Family AT5G56040 54.931 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops2g04037 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04037 - - gmx:100778064 1781.53