LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g04024	ATGCAAATTTTCAACCTGGTTGTTCCTGAAAACCTTATATGGGTAATCTTGATACCCTCGTTGTTTTCATGCACGGTTTCCTCTGAGGGTGGAATAAAAGAAGCTGGTCTCACGTGCGGGTCTTATCAGTACCCAGGTGAAGGTGGAGGGAAGTTGATGCAAAACTTCATGGCTCTAATGGACGCTGTGTCGTTTCAGGTGAAAGAACGAGGGTGGGGAGCACAGACATTACTTGGCAATGTTCATCCAATGTACGCATTAGGCCAATGCCACCTTGATCTCAATCGCACACAATGCTACACTTGTTTCACACAAGCAAGGCAATTGTTATCAAGATGCATACCAAAGGTGGCTGGTAGAATTTACCTTGATGGTTGCTTCCTTCGTTATGACAATTATACTTTCTTCAATGAAGGCGTGGACCCTTCACACGACACTAACGTTTGTGAGTTGACAAAGGAAGCTTTGGACTCCGAAGGGGTTGCTTCGGTGATCTTGAACGTGACAAAGAGTGCGGGGGTAAATAAGTTTGCGGTGGATGGGGAGGGGAGTGTTTTTGCGTTAGCGCAGTGTTGGGAGACAGTGGATAAGTGGAATTGCCAGAGATGTTTGAGAGAAGCAGGGAAAAGGGTGCAAGGATGTGTGAATGGTGGAGGTGGTGGTAGGAGTCTATTTACTGGTTGTTTTTTGAGGTATTCAAACCACAAATTCTACAATGATCTTACACAAAATCAGATAAAGGATCAAACAGAAAGGCCTAGTGTTTGGATGATCGTTGCATATGTATTATCAGCAATTGCAGTGGTTTTATTGATCGTCCTTGGTGTACTTCTGTGCTGGAAGAGAATAGCATCACTTCGAAAAAGAAGCAACCGTTTTGGTGCATCACCTGGTTTTGCCCACATAGCTGGTATTAGTTTTAGCTACGATTTGCTTGAGAAAGCCACAAATTATTTTGATCCTGCAAACAAATTAGGCCAGGGAGAAGCTGGTTCTGTGTTCAAAGGAACACTCCCCTCAGGGAATACTGTTGCTGTGAAAAGACTGTTTTTCAATACACGACAATGGACAGAAGGGCTCTTCAATGAGGTCAATTTGATTAATGGGATTCAACACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGCCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCTAGTAAAAGTCTCGATCAAATCCTTTTCGGTAAGGACTCAGAAAATGTTCTGACCTGGGAGCAACGGTTTCAAATCATATGTGGAATAGCTGAGGGCTTAGCATACCTTCATGGAGGCTCCGGAGCAACGATAATTCATAGAGACTTAAAGCCTAGTAACATTCTGCTTGATGAGAATCTTAATCCAAAAATTGCTGATTTTGGTCTTGCTCGTTGTGTTGCTGAAAATAAATCTTATCTCAGCACTGGAATTGCTGGGACATTGGAATATATGCCTCCTGAGTATCTCATCCGAGGACAACTGACAGAAAAGGCAGATGTTTATGCATTTAGTGTGATGGTTGTTGAAATTGTCTGTGGCAAGAAGAACAATGTTTCCACACAAGGGTCAACTTCAGTACTCCACTGTGTATGGAAGAATTACAAGGCAAACAATATCACAGCATCTGTTGATTCTGCTCTGCATGGCAAATTTATGGTAGAAGAGGCATCAAATGCACTACAAGCTGGCCTTCTTTGTACACAATCTTCTATTAGTCTTAGACCATCCATGAATGAAGTAGTTCAGATGCTAACCAAGAAAGACTATGTTATTCCCTCTCCAAAGCAACAACCATTCCTTAATTCTAGTGTGCTCAGTCTGAATGGTCGCACCTTAACTTCAACAATGAGTTTTATGTCCTCAAATGGACGTACAAGTGCAAGATCTTCTTTCCACAGCACCACTAGTTCCTTGACCCCAAATGAGGATTCAATACTGCTAGGGAACTCCTTTTCTTCTTCTTCCCATTTTGTCACTACATGGAGCCCTGATTCAAATATTCAAGCAAATATTGGGGCACCTGAGCCAAGGTAG	2043	0.4258	MQIFNLVVPENLIWVILIPSLFSCTVSSEGGIKEAGLTCGSYQYPGEGGGKLMQNFMALMDAVSFQVKERGWGAQTLLGNVHPMYALGQCHLDLNRTQCYTCFTQARQLLSRCIPKVAGRIYLDGCFLRYDNYTFFNEGVDPSHDTNVCELTKEALDSEGVASVILNVTKSAGVNKFAVDGEGSVFALAQCWETVDKWNCQRCLREAGKRVQGCVNGGGGGRSLFTGCFLRYSNHKFYNDLTQNQIKDQTERPSVWMIVAYVLSAIAVVLLIVLGVLLCWKRIASLRKRSNRFGASPGFAHIAGISFSYDLLEKATNYFDPANKLGQGEAGSVFKGTLPSGNTVAVKRLFFNTRQWTEGLFNEVNLINGIQHKNVVKLLGCSIEGPESLLVYEFVPSKSLDQILFGKDSENVLTWEQRFQIICGIAEGLAYLHGGSGATIIHRDLKPSNILLDENLNPKIADFGLARCVAENKSYLSTGIAGTLEYMPPEYLIRGQLTEKADVYAFSVMVVEIVCGKKNNVSTQGSTSVLHCVWKNYKANNITASVDSALHGKFMVEEASNALQAGLLCTQSSISLRPSMNEVVQMLTKKDYVIPSPKQQPFLNSSVLSLNGRTLTSTMSFMSSNGRTSARSSFHSTTSSLTPNEDSILLGNSFSSSSHFVTTWSPDSNIQANIGAPEPR*	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g04024	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	440	452	IPR008271	GO:0004672\|GO:0006468
	Rops2g04024	680	ProSiteProfiles	Protein kinase domain profile.	319	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g04024	680	Gene3D	-	38	135	IPR038408	-
	Rops2g04024	680	Gene3D	-	146	237	IPR038408	-
	Rops2g04024	680	Pfam	Salt stress response/antifungal	175	234	IPR002902	-
	Rops2g04024	680	Pfam	Salt stress response/antifungal	54	133	IPR002902	-
	Rops2g04024	680	MobiDBLite	consensus disorder prediction	622	642	-	-
	Rops2g04024	680	FunFam	Cysteine-rich receptor-like protein kinase 2	395	595	-	-
	Rops2g04024	680	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	84	620	-	-
	Rops2g04024	680	Pfam	Protein kinase domain	322	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g04024	680	SUPERFAMILY	Protein kinase-like (PK-like)	306	605	IPR011009	-
	Rops2g04024	680	FunFam	Putative DUF26-domain receptor-like protein kinase family protein	290	394	-	-
	Rops2g04024	680	ProSiteProfiles	Gnk2-homologous domain profile.	139	237	IPR002902	-
	Rops2g04024	680	CDD	STKc_IRAK	325	589	-	-
	Rops2g04024	680	ProSiteProfiles	Gnk2-homologous domain profile.	32	135	IPR002902	-
	Rops2g04024	680	Gene3D	Phosphorylase Kinase; domain 1	285	394	-	-
	Rops2g04024	680	Gene3D	Transferase(Phosphotransferase) domain 1	395	597	-	-
	Rops2g04024	680	SMART	serkin_6	319	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g04024	Rops-Chr2	73546173	73549459	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g04024	55	610	Receptor kinase-like Gene Family	AT1G70520	42.535	9.07e-142	427

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops2g04024		Pkinase	2.1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g04024	-		-	gmx:100780384	837.025