Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04017 ATGTTGCCCTCAGTTTCTGTTACTCCTTCTCTCATGGCCCTTGAGACAAATCTCAGAGAAAACTATGCCTCACAACCAATGCATTTGCAAGAAAACTACTTGAAACCCAGCATGAAAGATGAGCTTCCTTTTGGAACTCCTTCCTCTCAGGTTTTCATGCAAGATTTTCACCATATTGATCAGTTTCATGTGAATGGCTTCTCATCCAGTCCAGTTTTAGGGGTCCAAACTCCAAATTTTGATCCTTTTGATAATGAAACCAGTGAGTGTGCACAGACAGGTTTTGAAGTTTATGAGGGCAAGCCTTTTGCTGAGAATAATGGTAGTGTGCATGCTCACCTTATGGACAATTTCCAATATGAAGGTTATAATTTGAATCTCCCTAGGAGGAATCAAATGGATATGATGGTTGCAAACCAAAGCTATTTGCCCTATAATCCTCTAGAAACCAAGTCCTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATAACCCCAGCAAATTATTATAAGAGAGTTGACTTGAATAAAAATAACAGGGAATCTCCAACCACTAGAAGAACGTTTAAAACCCGGAAGAAGTCCAATATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAACTGGTCGAACAATATGGAATGAGGAAGTGGTCTCATATAGCTCAGAAGTTGCCTGGAAGAATAGGGAAACAGTGCAGAGAAAGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGATATATGGACTGATGAAGAGGATAAGATACTGATCCAAGCTCATTCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACTGAGAACTCAATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAATGTCGCTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACTTGGACCAAAACCCACCAAGAGACTATCGAAAAAAATCTGTTGTTAATGCTAATAATGCCAAGACAAACAATACTAGCACAAGCAAAGCTGAGTCCCTGTTAACAGCAGATCAGATATGTTCCAGTGACCACTTGGTGCCAAACTATGACTTTAATGAGGTCCCAGAATTTTGCATGGATGGTAGTTTGTTTGAAGAGGGGTGTAGTATTGATTCTCTGCTAGATGATGTGCCTAGTGTTCCTCCTATGGATGGGAAAGATTTTAATGGAAAAATGCAATTTGCTACTACTAATACTATGGAAGGAAAACAATCTGATATGGGAGACATGCAAGTTGTTAATGTTGATGATGAACATCACTTTGAGACAGAGATGCCACAGGAGATTCAAGTTAAGAAGGAGCTGGATTTGGTGGAAATGATGTCTCAGGTTAATCAAAGTGTTGATGTGTAA 1422 0.3938 MLPSVSVTPSLMALETNLRENYASQPMHLQENYLKPSMKDELPFGTPSSQVFMQDFHHIDQFHVNGFSSSPVLGVQTPNFDPFDNETSECAQTGFEVYEGKPFAENNGSVHAHLMDNFQYEGYNLNLPRRNQMDMMVANQSYLPYNPLETKSLNFVVPDEVSCITPANYYKRVDLNKNNRESPTTRRTFKTRKKSNIVKGQWTVDEDRLLIQLVEQYGMRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPRDYRKKSVVNANNAKTNNTSTSKAESLLTADQICSSDHLVPNYDFNEVPEFCMDGSLFEEGCSIDSLLDDVPSVPPMDGKDFNGKMQFATTNTMEGKQSDMGDMQVVNVDDEHHFETEMPQEIQVKKELDLVEMMSQVNQSVDV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04017 473 CDD SANT 202 245 IPR001005 -
Rops2g04017 473 Pfam Myb-like DNA-binding domain 254 293 IPR001005 -
Rops2g04017 473 Pfam Myb-like DNA-binding domain 199 245 IPR001005 -
Rops2g04017 473 ProSiteProfiles Myb-like domain profile. 246 296 IPR001005 -
Rops2g04017 473 Gene3D - 253 314 - -
Rops2g04017 473 FunFam Transcriptional activator Myb isoform A 198 251 - -
Rops2g04017 473 SUPERFAMILY Homeodomain-like 196 292 IPR009057 -
Rops2g04017 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 249 IPR017930 -
Rops2g04017 473 FunFam Transcription factor MYB119 252 316 - -
Rops2g04017 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 250 300 IPR017930 -
Rops2g04017 473 CDD SANT 254 296 IPR001005 -
Rops2g04017 473 PANTHER MYB PROTEIN-RELATED 178 345 - -
Rops2g04017 473 ProSiteProfiles Myb-like domain profile. 194 245 IPR001005 -
Rops2g04017 473 SMART sant 198 247 IPR001005 -
Rops2g04017 473 SMART sant 250 298 IPR001005 -
Rops2g04017 473 Gene3D - 198 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04017 Rops-Chr2 73489455 73491231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04017 71 408 MYB Transcription Factor Family AT4G18770 49.046 1.07e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04017 Myb_DNA-binding 4.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04017 K09422 - gmx:100816653 680.248