Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04005 ATGGAAGGTGAGCATGGATATAAGAAGGGGTTCTGGAATGTGGAGGAAGATAGGGTTCTAATCGATTACGTTAAGAAGCATGGAATAGGGAAGTGGAATCGTATAGCTAAAGTGACAGGGTTGAAGAGATGCGGCAAAAGTTGCAGACTTAGGTGGATGAATTATCTCAATCCTGATGTCAAGCGTGGTGACTTCTTAGAGGAAGAAGAAGACCTAATTATTCGCCTCCACAAGCTCCTTGGAAATAGGTGGTCTTTGATAGCGGGGAGGATTCCGGGGAGGACAGACAACCAAGTGAAGAACTACTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTAAGAAGGAAAAGAACAAAGTTTGTACCCCTCCAAAAATTCTCCCTAATGAACCAAAGGATAATTGCAATAGCATATCAAAGAGCACCAAGCATTCAGAGTCCACCGGTGAAGGTGAAAAACTTGTCCAAGCAAGCTGGTTTGGTGATCTGAACTTCGCGAGCACGCATGAGGGAATTGTCACAGATGATTTAGGGAGTGCCTTTTGTTTCGCTGATAGTGAGCTTGATCTATACACTCCTTACTTTCCGGAGTATTTTCTTGGCCTATGA 609 0.4368 MEGEHGYKKGFWNVEEDRVLIDYVKKHGIGKWNRIAKVTGLKRCGKSCRLRWMNYLNPDVKRGDFLEEEEDLIIRLHKLLGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVKKEKNKVCTPPKILPNEPKDNCNSISKSTKHSESTGEGEKLVQASWFGDLNFASTHEGIVTDDLGSAFCFADSELDLYTPYFPEYFLGL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04005 202 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 144 - -
Rops2g04005 202 Gene3D - 64 148 - -
Rops2g04005 202 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Rops2g04005 202 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Rops2g04005 202 CDD SANT 67 107 IPR001005 -
Rops2g04005 202 FunFam Transcription factor WER 63 146 - -
Rops2g04005 202 FunFam MYB-related transcription factor 8 61 - -
Rops2g04005 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Rops2g04005 202 CDD SANT 12 56 IPR001005 -
Rops2g04005 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 56 IPR017930 -
Rops2g04005 202 Gene3D - 9 61 - -
Rops2g04005 202 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Rops2g04005 202 SMART sant 61 109 IPR001005 -
Rops2g04005 202 SMART sant 8 58 IPR001005 -
Rops2g04005 202 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Rops2g04005 202 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04005 Rops-Chr2 73249593 73250815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04005 4 149 MYB Transcription Factor Family AT5G40330 65.068 1.41e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04005 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04005 K09422 - qsu:112019345 231.491