Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04003 ATGAATAACTTTTACTGGTTTAGAGAAATTTCTAACAATGTGAGGTCAGGGAGAAGGCTTTCTCTAGGGGAATACAAGCGAGCAGTGTCATGGTCTAAGTATTTGGTCTCTTCTGGGGCAGCCATAAAGGGAGAAGCTGAAGAGGATTGGAGTGCGGATTTGTCTCAGTTGTTCATTGGGTCCAAATTTGCTTCTGGAAGACATAGCAGGATCTACAGAGGCATCTACAAGCACATGGATGTGGCAATCAAGCTGGTGAGTCAACCAGAAGAGGATGAGGACTTGGCTGTTTTGCTTGAGAAGCAATTCACTTCTGAGGCTGCTTTGCTCTTTCGATTGCGCCATCCAAATATCATTACTTTTGTTGCAGCTTGCAAGAAACCTCCTGTCTTCTGTATAATTACAGAATATTTGGCTGGGGGATCTTTGAGAAAATACCTGCAACAGCAAGGACCACATTCAGTTCCTCACAAACTTGTTCTAAAATTAGCTCTAGACATTGCACGGGGAATGCAATATCTTCATTCTCAGGGTGCACTTCATAGGGATCTCAAATCAGAAAATCTTCTGTTGGGTGAAGATATGTGTGTAAAAGTGGCAGATTTTGGGATCTCATGTTTAGAATCCCAGTGTGGTAGTGGGAAAGGATTTACAGGAACTTACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCGTCATACCAAGAAAGTAGATGTCTATAGTTTCGCCATTGTTCTATGGGAGCTTTTAACTGGACTGACACCATTTGACAACATGACACCAGAACAAGCAGCCTATGCAGTGACCCACAAGAATGCAAGGCCTCCTTTACCATCTGACTGTCCAAGGGCATTTAGTCATCTAATCAACAGATGCTGGTCAAGCAATCCAGCTAAACGGCCACATTTTGATGAGATAGTCTCAATTTTGGAGAACTATACTGAATCACTTGAGCAGGATCCAGAATTTTTCTCTACTTACAAACCACGTCCAAGTAATATGATTCTGAGATGCTTACAAACATGTAATGCTGGCCTTAAATCTGCTTGCAAAGCTTAG 1062 0.4228 MNNFYWFREISNNVRSGRRLSLGEYKRAVSWSKYLVSSGAAIKGEAEEDWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVLLEKQFTSEAALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLQQQGPHSVPHKLVLKLALDIARGMQYLHSQGALHRDLKSENLLLGEDMCVKVADFGISCLESQCGSGKGFTGTYRWMAPEMIKEKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAVTHKNARPPLPSDCPRAFSHLINRCWSSNPAKRPHFDEIVSILENYTESLEQDPEFFSTYKPRPSNMILRCLQTCNAGLKSACKA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04003 353 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04003 353 Gene3D Transferase(Phosphotransferase) domain 1 140 339 - -
Rops2g04003 353 Pfam Protein tyrosine and serine/threonine kinase 59 311 IPR001245 GO:0004672|GO:0006468
Rops2g04003 353 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g04003 353 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Rops2g04003 353 CDD STKc_MAP3K-like 64 311 - -
Rops2g04003 353 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Rops2g04003 353 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
Rops2g04003 353 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 316 - -
Rops2g04003 353 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Rops2g04003 353 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Rops2g04003 353 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Rops2g04003 353 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Rops2g04003 353 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04003 Rops-Chr2 73188337 73191576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04003 30 320 MAP Kinase Kinase Kinase AT1G62400 64.068 1.33e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops2g04003 PK_Tyr_Ser-Thr 7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04003 - - gmx:100778530 658.292