Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03995 ATGAAAAGCACAAACACAGACACAAACACTACTAAGGATTCATCAAAACTTGATCGCAAAACTATAGAAAGGAACCGCAGAATTCACATGAAAGCTCTCTGCTTCAAGCTTATTTCCACTATTCCTTCTAAGTACCTCAAACCCACCAAGGACATGCTGTCACAGCAGGAACAGCTGGATCTAGCGGCCACGTATATAAAGCATCTGAGAGAGAAAATTGACAAATTAAAGGGGAAGAAGGAGCAAGCCATGAACATGATGAGCTCAAACAAAAACAATAATAGAGTTTTTAATATTGGCTCAAAATTGCCCCTACTTGAGATAAGAGACTTGGGTTCCGGTATTGAAGTGATGTTGATAAGTGGGTTGAACAAGAACTTCATGCTCTACGAAGTAATTAGTGTCCTTGAGGAAGAAGGCGCTGAAGTTGTCACTGCTAACTTCTCTACTGTTGCAGATAAAATTTTTTACACTGTTCATGCTCAGGTTAAAATATCAAGAGTTGGGGTTGAGCCAACGAGGGTATATCAGCGGCTTCAGGAGTTGATTGCACCACTAGAAAGCTGGGAATACATTTCATGA 582 0.4038 MKSTNTDTNTTKDSSKLDRKTIERNRRIHMKALCFKLISTIPSKYLKPTKDMLSQQEQLDLAATYIKHLREKIDKLKGKKEQAMNMMSSNKNNNRVFNIGSKLPLLEIRDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLESWEYIS* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03995 193 Pfam Helix-loop-helix DNA-binding domain 19 70 IPR011598 GO:0046983
Rops2g03995 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 83 IPR036638 GO:0046983
Rops2g03995 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 182 - -
Rops2g03995 193 Coils Coil 66 93 - -
Rops2g03995 193 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g03995 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 69 IPR011598 GO:0046983
Rops2g03995 193 FunFam Transcription factor bHLH162 6 97 - -
Rops2g03995 193 Gene3D - 5 97 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03995 Rops-Chr2 73046463 73048135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03995 11 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.426 2.40e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g03995 HLH 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03995 - - gmx:100811485 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03995 2 73046463 73048135 Rops10g00643 10 15752575 15753913 ECH
Rops2g03995 2 73046463 73048135 Rops2g03995 2 73046463 73048135 ECH
Rops2g03995 2 73046463 73048135 Rops10g00643 10 15752575 15753913 PCT