Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03990 ATGACTACTCATATTTGCAATCAAAGGGATCGCCGTGTCTTATCATTCCCGGCGGTTCACCCTTGTGAAGGCATATCTCCGGTCACACTTGTCACTTCTCTTATCACTCTCTCACAAAACATGTGCAATTTCCAACCCCAATTGTTCCTCACTCAAAGAAAAAATGCCAGAGAAACAATACGCCAAATTGGAATTCTTTTGATATTCTTACAGGAAATTCGAGACCGTGGCTTGTTTATCCCTGACTCTATTGTCCTATGCTTCTCAGAGCTCCACTTCACTTTACAAAAGATTCACTTCCTGATGCAAGATTGTACTCTAGAAGGTGCACGCCTATTGATGCTCACAAAATCCCACTACGTTTCTACTCAGTTCAGGGCTCTTAATCGTGCCATGGCCACTGCTTTAGATGTTTTGCCTCTGCACAGGGTCGAGGTTTGTGATGAAGTGAAGGAGTTAGTGGAGTTAGTGGCCAAACAAGCGAGGAAAGCCAAGTTCGAAGTAGACCCCAACGATGAGCGAGCAAGCAAACGAGTTCATTCGATCCTTCGTCAGTTCGAGAGGGGAACAGAACCAGATGTTAGTGCCATGAAGGGAATCCTTGACTACCTTGAAATCAAGAGCTGGACAGATTGTAACACAGAGATCAATTTCTTAGAAAACGAGATAACCTTGGAGTGCCGTGATCATAATGAACGAGAGTTTCCACTTCTAAGTAGCTTGGTGGGGTTCTTGAGTTACTGTCGGGTGGTAATTTTCGAAACTTTGGACTACCGCGTCCCATTAAACTCTGATCAATCCGAAGGTAGATGCAGCACAGAGATGATAACATGCGTGAATCCAGAGGATTTCCGGTGTCCAATTTCCCTCGAATTGATGACAGATCCAGTTACGGTTTCAACGGGTCAGACCTATGATAGAGCTTCCATTCAGAAATGGCTCAAAGCTGGGAACATTGCATGTCCCAAAACAGGGGAGAAGCTCACAAACACAGAGTTAGTCCCAAACACAACACTCAAGAGGCTTATCCAACAATTCTGCACCGACAATGGAATTTCACTCACAAAATCATGTAACCGTAGCCGTGACATAACGAGGACTATCAGCCCAGGTAGTTCAGGAGCAGCACATGCCATGCAGTTCCTTTCGTGGTTTCTGACACGAAGGCTCGTGTTTGGAACCGAAGAACGAAAGAACAAGGCTGCTTATGAAATTCGTGTTCTTGCCAGGTCCAGCATTTTCAACAGGGCGTGTTTGATTCAAGTTGGAACTGTGCCACCACTGTTGGATCTTTTGTCCACCGATGATAAAACCACGCAAGAGAATGCAATCTCTGCTTTGTTGAAGCTCTCCAAGCATGCTAGTGGCCCTGAAAATATCATGGCAAGTGAGGGTTTAAAGCCAATTCTATTGGTACTCAAAAAAGGGCTTAGCCTTGAAGCTCGCCAAATTGCAGCTGCTATAATATTTTACCTTTCTTCGGAGAAGGAATATAGGAAACTAATAGGAGCAAACCCAGAGGTAATTCCAGCTTTGGTAGAATTGGTCAAGGAAGGAACAACCTGCGGGAAAAAGAATGCTGTGGTTGCAATTTTCGGGTTGCTTTTGCTTCCTAGGAATCATCAAAGGGTGCTTGTGGCTGGTGCTGTTCCTGTGCTTGTTGATATTTTGGCTTCTTCAGATAAGGATGAACTTATCACTGAATGTTTAGCTGTTGTTGCGGCAATGGTTGAAAATGTTGATGGAGCACGTGCTGTATTACAAGCCTCAGCGTTGCCATTGATCATTGGGATGTTGCGATCTTCCATGTCGTCACGTGCAGGGAAAGAACACTCTGCTTCAATTTTGCTGTCACTGTGTGTCAATGTGGGTGCAGAGGTAGTAGCTGTTCTTGCCAAAGACCCTTCGCTAATGCCTTTGCTTTATTCACTTCTTACCGATGGCACTTCTCATGCTGCCAAGAAAGCACGATTCCTCATTAAAATTCTACAAGATTTTAAGGAAACAAGAACTTCTGGATTGAAGCGTTCCTCAGTTCCACAAGAACGATCCCTTCACGTTTGGTGA 2067 0.4456 MTTHICNQRDRRVLSFPAVHPCEGISPVTLVTSLITLSQNMCNFQPQLFLTQRKNARETIRQIGILLIFLQEIRDRGLFIPDSIVLCFSELHFTLQKIHFLMQDCTLEGARLLMLTKSHYVSTQFRALNRAMATALDVLPLHRVEVCDEVKELVELVAKQARKAKFEVDPNDERASKRVHSILRQFERGTEPDVSAMKGILDYLEIKSWTDCNTEINFLENEITLECRDHNEREFPLLSSLVGFLSYCRVVIFETLDYRVPLNSDQSEGRCSTEMITCVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNIACPKTGEKLTNTELVPNTTLKRLIQQFCTDNGISLTKSCNRSRDITRTISPGSSGAAHAMQFLSWFLTRRLVFGTEERKNKAAYEIRVLARSSIFNRACLIQVGTVPPLLDLLSTDDKTTQENAISALLKLSKHASGPENIMASEGLKPILLVLKKGLSLEARQIAAAIIFYLSSEKEYRKLIGANPEVIPALVELVKEGTTCGKKNAVVAIFGLLLLPRNHQRVLVAGAVPVLVDILASSDKDELITECLAVVAAMVENVDGARAVLQASALPLIIGMLRSSMSSRAGKEHSASILLSLCVNVGAEVVAVLAKDPSLMPLLYSLLTDGTSHAAKKARFLIKILQDFKETRTSGLKRSSVPQERSLHVW* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03990 688 SUPERFAMILY RING/U-box 278 354 - -
Rops2g03990 688 Gene3D - 346 672 IPR011989 -
Rops2g03990 688 FunFam RING-type E3 ubiquitin transferase 279 354 - -
Rops2g03990 688 FunFam RING-type E3 ubiquitin transferase 360 674 - -
Rops2g03990 688 SUPERFAMILY ARM repeat 390 663 IPR016024 -
Rops2g03990 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Rops2g03990 688 PANTHER U BOX DOMAIN-CONTAINING 81 663 - -
Rops2g03990 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 345 IPR013083 -
Rops2g03990 688 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Rops2g03990 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Rops2g03990 688 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Rops2g03990 688 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Rops2g03990 688 Pfam Armadillo/beta-catenin-like repeat 415 451 IPR000225 GO:0005515
Rops2g03990 688 SMART arm_5 537 578 IPR000225 GO:0005515
Rops2g03990 688 SMART arm_5 411 452 IPR000225 GO:0005515
Rops2g03990 688 SMART arm_5 454 494 IPR000225 GO:0005515
Rops2g03990 688 SMART arm_5 579 621 IPR000225 GO:0005515
Rops2g03990 688 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03990 Rops-Chr2 72987846 72990117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03990 4 688 U-box Gene Family AT1G60190 40.000 1.87e-171 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03990 - - gmx:100787869 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03990 2 72987846 72990117 Rops2g03990 2 72987846 72990117 ECH