Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03987 ATGTTGGCAAGATCATACATGAATTTGGGGGATTTGGTGTCCGGGGACATTTTCCCTCAAACTCCCGAAGCTCTTCCCCGAGCTATGACTATTCCAGGAATTATGACCGATGTAGATGGAAAACACAGGGACAATGATGATTCATATGCTTTCTCGTCAGAATGCCATCACAAGATCATAATAGTAGCAAATTTTCTACCTCTGAATGCTCGAAAGGAGGAAATATCTGGCAGATGGTGCTTTACTTATGACGAAGATTCAGTTTTGTTGCAGTTAAAGGATGGTCTCTCTTCTGACACTGGCATTGTTTATGTGGGATCTCTGAAGGTTGATGTTGACGCTAGTGAACAAGAGAAAGTTTCTCTTGATCTGCTGAACGAATTCAATTGCATGCCAACCTTTATTCCTTTAGACCTCCAGAAAAATTTTTATAATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGACTACTGCAATAGCTTTGATAGGTCACTGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTGATGGAGGTCATTGATCCGGAACATGATTATGTATGGGTTCATGATTATCATCTTATGGTTCTTGCAACATTTCTGAGGAAGCGGTACAGTCGTGTCAAGCTAGGATTTTTCCTCCACAGTCCATTTCCTTCATCAGAAATTTATCGGGCTCTACCTGTCCGCGATGAAATTTTGAAAGCGCTACTTAATGCAGATTTAATTGGTTTCCATACATTTGATTATGCTCGCCATTTTCTATCCTGCTGCAGTCGAATTCTTGGCTTAAAATATGAATCCAACAGGGGTTACATTAAGCTCGAATACTTTGGCCGCACAATATTCATTAAAATTTTGCCTGTAGGGATTCATATGGGTCAACTTCAATCTGCTTTGAATCACCCTTCTTCTTCAGTCAAAGCCAGAGAAATGTGTAAGAAGTTTAAGGGGAAAAAACTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGAATCGGGCTAAAACTCTTGGCCATAGAACAACTCCTTCAGCAATATTCTGCATTGCAGGGTGAATTAATAATGGTCCAAATTGTAAATCCAGCAAGCAGTACTGGTAAAGGTGTTGAGGAAGCAAGGAAGGAGACTTACATTACTGCAAAAAGGATAAATGAAAGGTTTGGTTGGCCAGGTTATGAACCTGTCATCATCATTGACCGTTATGTTCCTTTATATGAGAAGACATCCTACTATGCTTTAGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGCATGAATTTGGTTCCCTACAAGTACATTGTCTGCAGGCAGGGGAGTCCTAAAATGGACGAAGCTTTAGGAATTGCTTCCGAGTCCCCTCGTACAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTCAGTGGGGCAATCAGGGTAAACCCATGGGACATTAATGCTGTAGCTGATGCACTGAATTTGGCCATCACAATGTCCTCTGGAGAGAAACAATTGCGACATGAGAAGCACTATCGATATGTTAGCTCTCACGATATAGCTTACTGGGCCCGAAGTTTTATGCAAGATCTAGAGTACTCGTGCAAGGATCACTATAGTAAAAATTGCTGGGGGATTGGCTTTGGCTTGAGTTTTAGAATTTTGTCCCTTTCTCCTAGTTTCAGGAAGCTGTCCATGGGCCACATTGTCTCTGCATATAAAAGGACAAGTTGCAGGGTACTGTTTTTGGATTATGATGGAACAGTCGTACCTCAAGCTTCCATTGTTAAAACCCCCAGTCCTGAAGTCATAACTGTTCTAAGCAACCTTTGCAGTGACCCTAACAACACCGTGTTTATAGTAAGTGGCAGGGGGAAAACCATGCTGAGTGAATGGTTTGATCAATGTGAGAATCTGGGTATAGCTGCTGAGCATGGTTATTTTCTAAGATGGGATCAACAGTCAACTTGGGAAATGAGTCACATAAGCACAAATTTTTCTTGGAAAAGCATTGTTGAACCTGTGATGAGATTGTATACTGAGGCAACAGACGGCTCCTATATAGAGACCAAAGAGAGTGCCTTGGTATGGCACTACCATGATGCCGATCCTGATTTTGGATCTTGGCAAGCCAAGCAGCTGTTGGATCACCTTGAAAGTTTATTTGCAAATGAACCTGTAGTTGTTAAGAAGGGAAAGCATATTATTGAAGTCAAGTCACAGGGGAGTGATAAAGGGTCAGTTGTAGAGAAAGTTCTGTCTAGAATGACAAGAAATGGGAAATTGCCAGATTTTGTACTGTGCATAGGTGATGATAGATCTGATGAGGACATGTTTGAGAGCTTGTTAACTAGAGCTTATAGTGGAACCTCTTCTCCTGCACCAGAAATATTTGCATGCACTGTTGGTCAAAAACCAAGTAAAGCCAGGTATTACTTGGATGATACTGTGGATGTGAGGAGGTTACTTAAAGCTCTTGCTACCGTTTCGGGGCCCAAATCAAGTTGTTCTGAAGAAGACTCTTCTGAAAAAGCAAAAGTCTGTTTTGAGAATGTTGTTTGA 2595 0.4119 MLARSYMNLGDLVSGDIFPQTPEALPRAMTIPGIMTDVDGKHRDNDDSYAFSSECHHKIIIVANFLPLNARKEEISGRWCFTYDEDSVLLQLKDGLSSDTGIVYVGSLKVDVDASEQEKVSLDLLNEFNCMPTFIPLDLQKNFYNGFCKQHLWPLFHYMLPMYPDYCNSFDRSLWQAYVSANKIFADKVMEVIDPEHDYVWVHDYHLMVLATFLRKRYSRVKLGFFLHSPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKYESNRGYIKLEYFGRTIFIKILPVGIHMGQLQSALNHPSSSVKAREMCKKFKGKKLILGVDDMDIFKGIGLKLLAIEQLLQQYSALQGELIMVQIVNPASSTGKGVEEARKETYITAKRINERFGWPGYEPVIIIDRYVPLYEKTSYYALAECCIVNAVRDGMNLVPYKYIVCRQGSPKMDEALGIASESPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAITMSSGEKQLRHEKHYRYVSSHDIAYWARSFMQDLEYSCKDHYSKNCWGIGFGLSFRILSLSPSFRKLSMGHIVSAYKRTSCRVLFLDYDGTVVPQASIVKTPSPEVITVLSNLCSDPNNTVFIVSGRGKTMLSEWFDQCENLGIAAEHGYFLRWDQQSTWEMSHISTNFSWKSIVEPVMRLYTEATDGSYIETKESALVWHYHDADPDFGSWQAKQLLDHLESLFANEPVVVKKGKHIIEVKSQGSDKGSVVEKVLSRMTRNGKLPDFVLCIGDDRSDEDMFESLLTRAYSGTSSPAPEIFACTVGQKPSKARYYLDDTVDVRRLLKALATVSGPKSSCSEEDSSEKAKVCFENVV* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03987 864 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Rops2g03987 864 Gene3D - 720 853 IPR023214 -
Rops2g03987 864 Gene3D - 589 706 IPR023214 -
Rops2g03987 864 Pfam Trehalose-phosphatase 593 826 IPR003337 GO:0003824|GO:0005992
Rops2g03987 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 51 310 - -
Rops2g03987 864 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 546 - -
Rops2g03987 864 CDD HAD_TPP 591 832 - -
Rops2g03987 864 Gene3D Glycogen Phosphorylase B; 312 527 - -
Rops2g03987 864 Pfam Glycosyltransferase family 20 58 543 IPR001830 GO:0003824|GO:0005992
Rops2g03987 864 CDD GT20_TPS 58 543 IPR001830 GO:0003824|GO:0005992
Rops2g03987 864 Gene3D Glycogen Phosphorylase B; 50 311 - -
Rops2g03987 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Rops2g03987 864 FunFam Alpha,alpha-trehalose-phosphate synthase 312 527 - -
Rops2g03987 864 NCBIfam trehalose-phosphatase 590 838 IPR003337 GO:0003824|GO:0005992
Rops2g03987 864 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Rops2g03987 864 SUPERFAMILY HAD-like 590 838 IPR036412 -
Rops2g03987 864 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 851 - -
Rops2g03987 864 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 838 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03987 Rops-Chr2 72886929 72892927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03987 1 864 Trehalose Biosynthesis Gene Families AT1G23870 66.436 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03987 K16055 - gmx:100808800 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03987 2 72886929 72892927 Rops10g00634 10 15602603 15608991 PCT