Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03961 ATGGCAACACCAGATCCTCCTTCTCCCAGACACTACACTTACAACCGCAAGCAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTATAATAGAGATGGTGTCCACTTGATTGGCCTCGATGACGCCGCTGCACGATTAGGGGTCGAGAGGAGACGGATCTATGACATAGTCAACGTTTTAGAGAGCATTGGGGTGCTTGCAAGAAAGGCCAAGAATCAATACACCTGGAAGGGCTTCGGGGCAATTCCAGTGGCTTTAAGGGAGCTCAAGGAAGAGGGTTTGAGGGAGAACTCAAGCAATGCCTTTGAGGGTGGTAACGATAATGCAAAAGTGTCCGATGACGATGACGATGAAGAAACATTATCCAACCCCAGCACTGGAAGTCAGAATGACAAGTCGAACCCTGATTCTGCTCTTCCCAGATCTCAGAAAAATGATAATCGAAGGGAAAAATCTTTGGCGCTGCTTACTCAGAATTTCGTCAAGCTCTTTGTCTGCTCTAATGTGGAAATGATCTCCCTGGATGATGCTGCAAAATTGCTGCTTGGGGATGCCCATAATTCATCAATAATGAGAACAAAAGTTAGGCGCCTATATGATATTGCAAATGTGCTATCCTCCATGAACCTTATTGAAAAGACCCATACGACTGATACAAGAAAACCGGCATTCAGGTGGCTGGGTCTGAAAGGGAAGACATGGAATGAGTCATTTTACAATTCAAATCTCAACGATTCTAGGAAAAGGGCGTTTGGAAATGATGTCACAAACATCAGTTTTACAAGGAATAAAACGGATTTATTCATGAATGAGGACTTCAGCCAGAACCCTAAGAAACAAAAGAAATTGGAAAATGATATTGGCCTTGGCCAGGAAGATAAAAGCAATTTAAAACAATGCACAAAACAGACTTCAAGGAGCTATCAGTTTGGTCCTTTCGCTCCAGCCTATGTGCCCAAAGTTGGAACCTCTGAAAATAATGTGAAGCAGGTTCATGACTGGGAGAGTCTCGCAGAAGCACATTGTCCTCAGTATCAAAACCAAGCCTTGAGGGAACTCTTCTCTCATTACATGGAAGCTTGGAAATCGTGGTACTCTGAAGTTGCTGGAAAGAGGCCAATACAAATTTTGTAA 1143 0.4357 MATPDPPSPRHYTYNRKQKSLGLLCTNFLSLYNRDGVHLIGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALRELKEEGLRENSSNAFEGGNDNAKVSDDDDDEETLSNPSTGSQNDKSNPDSALPRSQKNDNRREKSLALLTQNFVKLFVCSNVEMISLDDAAKLLLGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLKGKTWNESFYNSNLNDSRKRAFGNDVTNISFTRNKTDLFMNEDFSQNPKKQKKLENDIGLGQEDKSNLKQCTKQTSRSYQFGPFAPAYVPKVGTSENNVKQVHDWESLAEAHCPQYQNQALRELFSHYMEAWKSWYSEVAGKRPIQIL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03961 380 PANTHER TRANSCRIPTION FACTOR E2F 9 348 IPR015633 GO:0000978|GO:0006357
Rops2g03961 380 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Rops2g03961 380 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Rops2g03961 380 MobiDBLite consensus disorder prediction 99 151 - -
Rops2g03961 380 FunFam E2F transcription factor 8 11 83 - -
Rops2g03961 380 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Rops2g03961 380 MobiDBLite consensus disorder prediction 125 144 - -
Rops2g03961 380 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Rops2g03961 380 Pfam E2F/DP family winged-helix DNA-binding domain 153 231 IPR003316 GO:0005667|GO:0006355
Rops2g03961 380 SUPERFAMILY "Winged helix" DNA-binding domain 153 232 IPR036390 -
Rops2g03961 380 Gene3D - 145 233 IPR036388 -
Rops2g03961 380 Gene3D - 11 84 IPR036388 -
Rops2g03961 380 FunFam E2F transcription factor-like E2FE 146 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03961 Rops-Chr2 72530161 72533306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03961 11 377 E2F-DP Transcription Factor Family AT3G48160 58.400 2.32e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops2g03961 E2F_TDP 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03961 K09391 - gmx:100795252 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03961 2 72530161 72533306 Rops2g03961 2 72530161 72533306 ECH
Rops2g03961 2 72530161 72533306 Rops10g00616 10 15190253 15195170 PCT