Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03953 ATGTCTCCCGCCTGCACCGCCGCTGACTCCGCCGTTTCCGGCGAGATCATGCTGTTCGGAGTCAGGGTCGTGGTTGATTCGATGAGGAAGAGCGTGAGTATGAACAACCTCTCACAATATGAGCATCCTCAAGACGCCAACAACAACAAAGAAGTTCTCGCCGCCGGTTACGCCTCCGCCGACGACGCCGTCCCTCAAAACTCCGGCAGGAACCGCGATCGTGAGCGCAAGCGAGGGGTTCCGTGGACGGAGGAAGAACACAAGCTATTCTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCAAGGAACTACGTGAAAACTCGAACTCCGACGCAGGTTGCAAGCCATGCTCAGAAGTACTTTCTCCGGCGAAGTAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACAACCGACACGGTCTCTGCAATCCCAATGGAGGAAGATAGCATCTCTCATTCACAGCCTGTTTGCCCTGCAGCCCCTGAAACTTGCAAAATCGATGGATTCCCTATGATGATGCCAGTATATCAGTTTGGTGTTAACGAGAGTCCAGTGGAAGAACTCACTTTGGGACAAGGAAACGTGAAACACAATGTGCCAACCAAGCTTATCCGTCCAATTCCAGTTGTTCCAGATCCTAAAGCTTCCACCGAGTCTGATGTCACCTCCAGTTCAAGTTCAGCTGTTGACCCACCAACACTGTCCCTTGGACTATCCTTCTCATCTGATCAAATTCAGACATCATCAAGACATTCACCTTTACATCCAATGCTATGTTTCAACAATGGAGATAGCATCATAAGTGTTGCTTGA 840 0.5024 MSPACTAADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDANNNKEVLAAGYASADDAVPQNSGRNRDRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEDSISHSQPVCPAAPETCKIDGFPMMMPVYQFGVNESPVEELTLGQGNVKHNVPTKLIRPIPVVPDPKASTESDVTSSSSSAVDPPTLSLGLSFSSDQIQTSSRHSPLHPMLCFNNGDSIISVA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03953 279 MobiDBLite consensus disorder prediction 58 80 - -
Rops2g03953 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Rops2g03953 279 MobiDBLite consensus disorder prediction 216 241 - -
Rops2g03953 279 MobiDBLite consensus disorder prediction 225 241 - -
Rops2g03953 279 FunFam transcription factor MYB1R1 80 131 - -
Rops2g03953 279 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Rops2g03953 279 Gene3D - 80 132 - -
Rops2g03953 279 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Rops2g03953 279 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Rops2g03953 279 CDD SANT 81 126 IPR001005 -
Rops2g03953 279 PANTHER TRANSCRIPTION FACTOR KUA1 3 224 - -
Rops2g03953 279 SMART sant 78 128 IPR001005 -
Rops2g03953 279 ProSiteProfiles SANT domain profile. 77 130 IPR017884 -
Rops2g03953 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03953 Rops-Chr2 72343353 72345334 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops2g03953 Myb_DNA-binding 7.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03953 - - psat:127073868 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03953 2 72343353 72345334 Rops10g00600 10 14997957 14999926 PCT