Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03946 ATGGAACCTCCCCTCATCAACGACTCCACATTCTCTTCCGCTAACCCTTCCTTGTCAGAGATTTGGCCCTCTCATTTCCCTCCCCACAACAACAACTCCACCCTCACTCCCCTTCGCAGGAAGAGAAACCACAACCACTCGGACGATTGTGGAAATAATAAACATATAAAATTAGGAGGAGGATCCGAGGATGAGAACGGTGCGTTGAAAGGTGAAGCAGATGCGACTTCTGTAGCCGGTAACAAGTTACCTGAAGAACAAAGTGCGAAACCACCTTCTTCTGAGCCACCTAAGCAAGACTATATACACGTGAGAGCCAGACGAGGCCAAGCTACCGATAGCCACAGTCTCGCTGAGAGAGCAAGGAGAGAAAAAATCAGTGAGAGGATGAAATTTCTTCAAGATTTAGTCCCCGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTTGATGAGATAATCAATTATATCCAATCACTGCAGCGTCAGGTTGAGTTTCTTTCAATGAAGCTTGAAGCAGTTAATTCGAGATTGAACATGAGCCCTGCTATTGAATGTTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACCTTGCTGGAATAATATTTGGATCTCAAGCAGCCAGGGGGTATGCTCAGGGATCACAACCTGGATGGCTTCAAATGCAGATAGCTGGTGGATTTGAGAAAGCAACATAA 702 0.4516 MEPPLINDSTFSSANPSLSEIWPSHFPPHNNNSTLTPLRRKRNHNHSDDCGNNKHIKLGGGSEDENGALKGEADATSVAGNKLPEEQSAKPPSSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKFLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNMSPAIECFPSKDVGTQPFDLAGIIFGSQAARGYAQGSQPGWLQMQIAGGFEKAT* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03946 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 160 IPR011598 GO:0046983
Rops2g03946 233 FunFam Basic helix-loop-helix transcription factor 107 179 - -
Rops2g03946 233 MobiDBLite consensus disorder prediction 1 38 - -
Rops2g03946 233 MobiDBLite consensus disorder prediction 41 61 - -
Rops2g03946 233 CDD bHLH_AtBPE_like 100 179 - -
Rops2g03946 233 Coils Coil 157 177 - -
Rops2g03946 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 180 IPR036638 GO:0046983
Rops2g03946 233 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 205 IPR024097 GO:0006355
Rops2g03946 233 SMART finulus 116 166 IPR011598 GO:0046983
Rops2g03946 233 Pfam Helix-loop-helix DNA-binding domain 114 161 IPR011598 GO:0046983
Rops2g03946 233 MobiDBLite consensus disorder prediction 1 99 - -
Rops2g03946 233 Gene3D - 107 184 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03946 Rops-Chr2 72265240 72269105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03946 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 48.611 4.69e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g03946 HLH 9.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03946 - - gmx:100799646 377.481