Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03939 ATGGACGGCGGCGATCATTCACTTTCCGATAAGGAGGAGGAGGAGGAGGAGGAGGAGAACGATTCGGAGGATATTTTGTTTCGATTTCGACTAGTCGATGCTCCTATACTCTTGTTCGTTTGCTTCCATAAGGCTTTCCGCTCTGAACTCGATCAGCTTCGTGGCTTGGCGGAAACGGCGTCGTTGGAGGATGACACACGCCGTTGCCGAGAAATAATCGCTAAGCTTCAACAAAGATTCCAGTTTCTGAAACTAGCTCAAAAGTATCATTGCGCTGCAGAAGATGAGGTTATCTTCCTTGCATTGGATATTCATGTGAAAAATGTGGTATGTACATATGCCCTTGAACATCACAGCACCCATGACCTGTTCGATTCCATCTTTCGCGTCTTGGATGAGCTGATGGGTCCTAATGAGAATATTTCCAAGCTGTTCCTAGAACTTGTGAACTGCATTGGTATCTTGCAAACCTCTTTCCACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAGAAATTATCTACTAAAGAACAGGCCTCACTTGTGTGGCAGTTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCGTGGATGGTATCCTTCCTTTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTAACCGAAATTGCACCCATGGAAAAAGCACTGCAAGAGGTTTTAGTTTCTTGGCTTGGAAGCAACAAACAAAGTGAAGAATTTCAAGATGCTATTAAAAGACTTGGGCTGAGTTGGAAATCTGAAGAAATTTCAAGTCAGATGAAAGTGAATGGCCAAGAAATAGAAGATGAAGTCAACCAGAATTTAGACTCAATACTTATCCAACTAAAATTCTTTGCCGATGTCCTCATCTTCTACCGCAATGCTCAGAAGAAATTCTTTCATCTGGTACTGAATGAACTTGCTTATGACTGGTTTTCCAAGTCTACTGAGCAATTTCTTGGAGAAAGTCACATTGAAGATATACAACAATCACTATTCTATAACTCAGAAAGTGGAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCAGAAAACTAGAATCATTTGTATCAGGAGTCAGCAAACAATTTGCTTTTCAAGAAATTGAGGTGTTTCCTGTCATTAGAAAGAACTGCAGAAATGGAATGCAAATGAGACTTCTAAGCTTGAGCCTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTCACTTGTCTGAAAAAGATTCCAGGTCTATTCTCTATTGCATAAAGGAAGGAAATAGTTCTGTCTGTAAAGCTTTTGTACAACTGTTACATGAGTGGTTCCGCGTTGGTTATTCAGGTAAAACCTCCATTGAAAATTTCCGACAGGACTTGCAGAACATGTTTAAAAGAAGATCCTCTTTTTTACCTGAGCAAATGAAGGAAGCTTGTGGGTTTTCTTTCTTAAATTCTGGCAAAGAGCCTCATAAAATCTCTGGCAAGAATTGTTTGTCCTGTTCCTCATCTTCTGGATCCAACAATGTGAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTCCCTGCCACTGCTGTGAAGTTAAATCAGCATCCTAGATTTCGTGCTGCAAATGGTTCTTCTATTTCCTTTCTTGATGATCCAAAACCAATTGACTTAATATTTTTCTTTCACAAGGCTATGAAGAAAGATTTGGATTACATGGTTATTGGCTCAGCTCAGTTAGAAGAAAACGATAAGTTGCTTATGGATTTCCACAAACGATTCCATCTCATATGCTTTCTTCATCAAATCCATAGTGACGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAACGGGTAAACTCAAAAACATTAGCCATGCCTACACCTTTGATCACAAACATGAAATTGATCATTTCAATAAAATATCTCGCATCCTCAATAAGATGTCTGAATTACATCTTTCAGTTTCTACTACTGATTCAAGGATAAGGAAGAATAGAATGCTAAGGCATCACCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGTGAGGAAGTAGAACTTTGGCCCATGATTAGAGAATTCTTCTCGAATCAGGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTAACGCAGGAAGAACAACATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGATGAATGGTTAGGTGAATGGTGGCATGGGTACAGTTTAGCTAAGGTAACAGAGGGATCAAATGATGCCTCTTTACTGGCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAGGAAGTTCTTAATGAATTACAAGAAGAGGCCAACAAAAGCATAATTTTTTTGCAGAAGGATCATATTGGTGATAATGTCGAGCTGTCTGACTACGATTTTGATATTAATGTTAAGGTTCATCATGCAGAACAAAAAAATAATGAATTTTCAAAATGCATGAATCAATTTCATGATAATAACAAACATGCCAGCAATGAAGTAACAGATGTCACAAATCCCATATACAATGAAGGTCAGTCTTTTCAATTTTGTGACAAGTCTGCGTATTATGACCGACTTCTGAAATTGAGTCAAGATGATCTGGAGATGGTAGTGAGAAGGGTGTCTCGCGACTCTTGCTTGGATCCTCAGAAGAAGTCACACATAATACAGAACCTACTAATGAGTCGTTGGATTATTCGACAGAAGATCTCTTCTACAGAAGCCAATATCAAAAGTGATGGACAGGAATTTCCTGGGAAGCATCCATCTTACAGGGACCCTCTCGAACTGATCCATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGCAACCAACTTCATACCTGCATACGTTGCCATGATGATGTATCGGATCATTTAGTTGACAGGAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGACGATTCAACCAATCAGTGCCACATGCTCAACAGTTTCTTGCCGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGCAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTTGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCGCTTATGATACATGCATGCAGGGAGAAATCCTTAGAGGATAACTGTCCAATTTGTCATGAATACATCTTCACATCCAGCTCTCCAGTAAAAGCCCTCCCATGTGGTCACGCGATGCACTCAACATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGTATGTTAGATGCATTATTGGCTGAAGAGAAAATGTCCGATGAGCTTTTGGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCAGCCCCTTTCCACTGGCTTTACCACAAATGCCCTTGTTGTGGTTCCTACAACACCAGAGTTCTATGA 3645 0.3931 MDGGDHSLSDKEEEEEEEENDSEDILFRFRLVDAPILLFVCFHKAFRSELDQLRGLAETASLEDDTRRCREIIAKLQQRFQFLKLAQKYHCAAEDEVIFLALDIHVKNVVCTYALEHHSTHDLFDSIFRVLDELMGPNENISKLFLELVNCIGILQTSFHQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKQAEVTQCLTEIAPMEKALQEVLVSWLGSNKQSEEFQDAIKRLGLSWKSEEISSQMKVNGQEIEDEVNQNLDSILIQLKFFADVLIFYRNAQKKFFHLVLNELAYDWFSKSTEQFLGESHIEDIQQSLFYNSESGMPLTKFVEKLCRKLESFVSGVSKQFAFQEIEVFPVIRKNCRNGMQMRLLSLSLHMMPLGLLKCVITWFSVHLSEKDSRSILYCIKEGNSSVCKAFVQLLHEWFRVGYSGKTSIENFRQDLQNMFKRRSSFLPEQMKEACGFSFLNSGKEPHKISGKNCLSCSSSSGSNNVNKYETPYSTGINLHIFFPATAVKLNQHPRFRAANGSSISFLDDPKPIDLIFFFHKAMKKDLDYMVIGSAQLEENDKLLMDFHKRFHLICFLHQIHSDAEDEIVFPALEATGKLKNISHAYTFDHKHEIDHFNKISRILNKMSELHLSVSTTDSRIRKNRMLRHHHLCRKLQEMCKSMHKLLSDHINREEVELWPMIREFFSNQEQGKIIGCMLGRIRAEILQDMIPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLGEWWHGYSLAKVTEGSNDASLLAVEPLEIISKYLSEEVLNELQEEANKSIIFLQKDHIGDNVELSDYDFDINVKVHHAEQKNNEFSKCMNQFHDNNKHASNEVTDVTNPIYNEGQSFQFCDKSAYYDRLLKLSQDDLEMVVRRVSRDSCLDPQKKSHIIQNLLMSRWIIRQKISSTEANIKSDGQEFPGKHPSYRDPLELIHGCKHYKRNCKLFAPCCNQLHTCIRCHDDVSDHLVDRKSITKMMCMKCLTIQPISATCSTVSCRNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMIHACREKSLEDNCPICHEYIFTSSSPVKALPCGHAMHSTCFQEYTCFNYTCPICSKSLGDMQVYFSMLDALLAEEKMSDELLGQTQVILCNDCEKKGAAPFHWLYHKCPCCGSYNTRVL* 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03939 1214 SUPERFAMILY CHY zinc finger-like 970 1035 IPR037274 GO:0008270
Rops2g03939 1214 FunFam Zinc finger protein-related isoform 1 1103 1152 - -
Rops2g03939 1214 Pfam Hemerythrin HHE cation binding domain 43 174 IPR012312 -
Rops2g03939 1214 Gene3D - 1179 1214 - -
Rops2g03939 1214 ProSiteProfiles Zinc finger CTCHY-type profile. 1044 1107 IPR017921 -
Rops2g03939 1214 CDD Hr-like 42 172 - -
Rops2g03939 1214 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g03939 1214 Pfam Zinc-ribbon 1155 1212 IPR039512 -
Rops2g03939 1214 SMART ring_2 1108 1149 IPR001841 -
Rops2g03939 1214 Gene3D nmb1532 protein domain like 559 749 - -
Rops2g03939 1214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1101 1152 IPR013083 -
Rops2g03939 1214 SUPERFAMILY Zinc hairpin stack 1045 1095 IPR037275 -
Rops2g03939 1214 SUPERFAMILY RING/U-box 1099 1155 - -
Rops2g03939 1214 Gene3D nmb1532 protein domain like 34 192 - -
Rops2g03939 1214 Pfam CHY zinc finger 979 1054 IPR008913 GO:0008270
Rops2g03939 1214 ProSiteProfiles Zinc finger RING-type profile. 1108 1150 IPR001841 -
Rops2g03939 1214 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 609 1214 - -
Rops2g03939 1214 CDD RING-H2_Pirh2-like 1107 1150 - -
Rops2g03939 1214 CDD Hr-like 566 712 - -
Rops2g03939 1214 ProSiteProfiles Zinc finger CHY-type profile. 972 1041 IPR008913 GO:0008270
Rops2g03939 1214 Pfam Ring finger domain 1106 1149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03939 Rops-Chr2 72116214 72130231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03939 34 791 C2H2 Transcription Factor Family AT3G18290 31.042 7.29e-99 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03939 K16276 - gmx:100802706 2010.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03939 2 72116214 72130231 Rops2g03939 2 72116214 72130231 ECH