Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03938 ATGACCCTTAAGGGTGGCACAACCCAGGCCTGTGCGGCATGCAAATTCCAGAGAAGAAAGTGCACTCCTGAGTGCGTTCTAGCTCCTTACTTCCCTGCAGACCAACCCAAGGTATTTCTAAATGTCCACAAGCTATTTGGAGTTAGGAACATAACCAAGATATTAGAGATGTTGGAGCCTAGTCAGAAGAAAATAGCTATGGACTCTATTATTATTCAAGCAAATTATAGGGATAAGTATCCTGTGCATGGCTGTTGGGAGGAAATCTGCAGGTTACAATACCAAATATGGTTGGCAGAAGAAGAGCTTCATGCTGTTTATCAACAGCTTGAAATGTGCAGGCAACACCACCAGCATCAAGGTCCATCTTTGCCTGATGATGTGACTTCACAATTAGAATTGGGAATGGCACCACGTGCTAATGCCCTCCCACTCTTTAATCACACTCCACAACCACAGACTTACAACACTCTGGCTGCTTTGTCTGTATCACAGCAACATTCCTACTCCAACAGCAATGGTGTGGATTATAACTCCCTGTACATGGATTCCAAGGATAACCCCACAAATCCTTTGTGGGTTCAGTACCCTTACCTAAATAACAATAGCAATTCAATAGCAATGCAACCTCAGTTGGTTGCCTCACAGCCACTAGCCATCCAACAAGAAGTTGTTGAAGATTATGATGAGATGCATCCATTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCCAAGGAGGCTTATGAATCAAGTTCAGAAGAATCACTGAAGGATACGAGAAAGTGCAATGAGCATGTTTCTGAGAATGAACTAAAGAGTGCTGCTGCATGCTTCAGCCTTACCAGTGTCAACTGA 864 0.4282 MTLKGGTTQACAACKFQRRKCTPECVLAPYFPADQPKVFLNVHKLFGVRNITKILEMLEPSQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLAEEELHAVYQQLEMCRQHHQHQGPSLPDDVTSQLELGMAPRANALPLFNHTPQPQTYNTLAALSVSQQHSYSNSNGVDYNSLYMDSKDNPTNPLWVQYPYLNNNSNSIAMQPQLVASQPLAIQQEVVEDYDEMHPFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCNEHVSENELKSAAACFSLTSVN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03938 287 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 165 - -
Rops2g03938 287 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Rops2g03938 287 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03938 Rops-Chr2 72113467 72114534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03938 1 250 AS2 family AT3G47870 41.613 6.70e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g03938 LOB 5.3e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03938 2 72113467 72114534 Rops2g03938 2 72113467 72114534 ECH