Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03933 ATGGGGAATTGCAACACGTGCGTGAAAGCAGAGGTGGTAGAATCAAACCGTGGAAGAAAGAGAAAAACCAAACCAAACCCATATGGAGAAGAAGTAGCTGCGATCCGTGTTCTGAAGGAGGTGAATCCATGGAGCAGAATCAGTGACAAATACATATTGGGTCGTGAACTGGGTCGAGGTGAGTTTGGCATAACATATCTATGCACTGATAAAGAAACAAAGCAAGAGCTTGCGTGCAAATCGATTTCTAAACGGAAGCTAAGAACTGCGGTGGATGTAGAAGATGTTCGGCGAGAGGTGGCGATCATGTCGACGTTGCCGGAGCATCCAAACGTGGTGAAACTCAAGGCAACTTACGAGGATGAAGAGAATGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTGCGAGGGGACATTACAGTGAACGTGCTGCTGCACATGTTGCAAGGACCATTGCTGAGGTTGTTAGGATGTGTCATGCTAATGGTGTCATGCATAGGGACTTGAAGCCTGAGAATTTTCTCTTTGCAAATAAGAAAGAGAATTCAGTTCTTAAGGCCATTGATTTTGGCCTATCAGTGTTTTTCAAGCCTGGAGAGAGGTTTTCGGAGATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTTTTGAAGAGGAATTATGGGCCAGAGGTTGATGTATGGAGTGCTGGTGTGATTCTTTATATTTTGCTATGTGGGGTGCCTCCATTTTGGGCAGAGACTGAACAAGGGGTTGCTTTGGCCATTTTAAGGAGTGTCATTGACTTTAGGAGGGAACCTTGGCCTCAGATTTCAGATAGTGCTAAGAGCCTTGTGCGCCAGATGTTGGAACCCGATCCTAAAAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGCTACAAAATGCAAAGAAAGCTTCAAATGTACCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCTGTGATGAACAGATTCAAAAAGAAAGCTCTTCGGGTAATTGCGGAACATTTATCCGTTGAAGAGGTAGAAATAATCAAAGATATGTTCACATTGATGGATACTGACAAAGATGGCAAAGTAACATATGAGGAACTGAAGGCTGGTTTGCGGAAGGTTGGTTCACAATTGGCTGAGTCAGAGATAAAGTTGCTGATGGATGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCATTTCCGGAAAGCATTCATGTTTTTTGACAAAGATGGGAGTGGGTATATCGAGTTAGGTGAGCTACAAGAAGCATTGGCAGATGAGTCAGGAGAAACTGACACTGCTGTACTAAATGAAATCATGCGTGAAGTTGACACTGACAAGGATGGTAGGATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGCTCCCTTCAGCTTCATGATGGGATTAGTGGTCAAGCTGTTGTGGTTTAA 1602 0.4395 MGNCNTCVKAEVVESNRGRKRKTKPNPYGEEVAAIRVLKEVNPWSRISDKYILGRELGRGEFGITYLCTDKETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPEHPNVVKLKATYEDEENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRSVIDFRREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDKDGKVTYEELKAGLRKVGSQLAESEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIELGELQEALADESGETDTAVLNEIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03933 533 SMART efh_1 392 420 IPR002048 GO:0005509
Rops2g03933 533 SMART efh_1 464 492 IPR002048 GO:0005509
Rops2g03933 533 SMART efh_1 356 384 IPR002048 GO:0005509
Rops2g03933 533 SMART efh_1 428 456 IPR002048 GO:0005509
Rops2g03933 533 FunFam calcium-dependent protein kinase 13 137 317 - -
Rops2g03933 533 Gene3D Phosphorylase Kinase; domain 1 52 136 - -
Rops2g03933 533 ProSiteProfiles EF-hand calcium-binding domain profile. 352 387 IPR002048 GO:0005509
Rops2g03933 533 FunFam Calcium-dependent protein kinase 1 53 136 - -
Rops2g03933 533 FunFam Calcium-dependent protein kinase 7 318 493 - -
Rops2g03933 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Rops2g03933 533 SUPERFAMILY EF-hand 337 516 IPR011992 -
Rops2g03933 533 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Rops2g03933 533 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Rops2g03933 533 Pfam Protein kinase domain 53 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03933 533 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Rops2g03933 533 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Rops2g03933 533 CDD EFh 428 490 IPR002048 GO:0005509
Rops2g03933 533 Gene3D Transferase(Phosphotransferase) domain 1 137 317 - -
Rops2g03933 533 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Rops2g03933 533 ProSitePatterns EF-hand calcium-binding domain. 365 377 IPR018247 -
Rops2g03933 533 ProSiteProfiles Protein kinase domain profile. 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03933 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 485 - -
Rops2g03933 533 CDD STKc_CAMK 50 308 - -
Rops2g03933 533 Gene3D - 318 493 - -
Rops2g03933 533 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Rops2g03933 533 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Rops2g03933 533 SMART serkin_6 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03933 533 SUPERFAMILY Protein kinase-like (PK-like) 48 317 IPR011009 -
Rops2g03933 533 Pfam EF-hand domain pair 357 416 IPR002048 GO:0005509
Rops2g03933 533 Pfam EF-hand domain pair 427 490 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03933 Rops-Chr2 72062911 72066669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03933 1 533 EF-hand Containing Proteins AT1G74740 79.889 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops2g03933 Pkinase 9.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03933 K13412 - gmx:100800559 966.837