Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03923 ATGGCGGGTGGGAGGGTCTTTAACGGTGGTCCTGCAAATGTTTCAAATATGAGTATTTTGCTTCAGAATCAAACTAGTCGTGTCGCTTCTCAACCTCTTGATTCTCTTTTCCTTTCTACTTCTGCTCCTTTTCTTGGTTCAAGATCCATGGTGAGTTTCGAAGATGTTCAAGGAATGAAGGGGGGTAACAGGTCTTTCTTCCACACATTTGATATCGATGAAAACGGTGATGATGGCATGGATGAGTACTTTCATCAACCGGAGAAGAAGCGGCGTCTCTCTGCTGACCAAGTTCAGATTCTTGAGAAAAGCTTCGAGGTGGAGAACAAGCTCGAACCCGAGAGGAAAACAAAGATAGCCAAGGACCTTGGTTTGCAACCACGGCAAGTTGCAATTTGGTTTCAGAACCGCAGAGCAAGGTGGAAGACAAAACGGCTAGAGAAGGATTATGAATCTCTGCATGCTAGCTATGAAAGTCTCAAGACCAACTATGACAACCTCCTTATGGAGAAAGAAAAGTTAAAAGCTGAGGTGACAAGCCTCACTGAAAAGGTTGTTGAAAGAGAGAAACAAGGGGGGAACTTTAAACAAGCTGAAAAAAGTGAAACAAACGGATTGCAGGAACCACCCCAAAAGCCTTTACTTGATTCAATTTCAGAGGGAGAAGAATCCAAAGTCTCTGTTGGGGCTAGTAAACAGGAAGATATTAGTTCAGCTGGGAGTGACATTTTGGATGATGGAGTTCATTCTGCACTGTTAGAGACAGGTGATTCTTCTTATGGATTTGAACCTGATCAATCAGAACTATCACAAGATGAAGAAGACAACTTCAGCAGAAGCTTGTGGCCTCCATACATATTTCCCAAACTTGAAGATGTGGATTACTCCGACCCGCCTGAAAGTTCATGTAACTTGGGATTTGCTGAGGAAGATCATGCCATTTGGCCCTGGTCTTATTAA 960 0.4323 MAGGRVFNGGPANVSNMSILLQNQTSRVASQPLDSLFLSTSAPFLGSRSMVSFEDVQGMKGGNRSFFHTFDIDENGDDGMDEYFHQPEKKRRLSADQVQILEKSFEVENKLEPERKTKIAKDLGLQPRQVAIWFQNRRARWKTKRLEKDYESLHASYESLKTNYDNLLMEKEKLKAEVTSLTEKVVEREKQGGNFKQAEKSETNGLQEPPQKPLLDSISEGEESKVSVGASKQEDISSAGSDILDDGVHSALLETGDSSYGFEPDQSELSQDEEDNFSRSLWPPYIFPKLEDVDYSDPPESSCNLGFAEEDHAIWPWSY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03923 319 SMART HOX_1 87 148 IPR001356 GO:0003677
Rops2g03923 319 Pfam Homeobox associated leucine zipper 144 185 IPR003106 GO:0006355|GO:0043565
Rops2g03923 319 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Rops2g03923 319 SUPERFAMILY Homeodomain-like 74 145 IPR009057 -
Rops2g03923 319 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Rops2g03923 319 Gene3D - 83 152 - -
Rops2g03923 319 MobiDBLite consensus disorder prediction 188 275 - -
Rops2g03923 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 231 IPR045224 GO:0003700
Rops2g03923 319 MobiDBLite consensus disorder prediction 224 238 - -
Rops2g03923 319 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Rops2g03923 319 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Rops2g03923 319 CDD homeodomain 89 145 IPR001356 GO:0003677
Rops2g03923 319 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Rops2g03923 319 Coils Coil 143 191 - -
Rops2g03923 319 FunFam Homeobox-leucine zipper protein HAT5 82 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03923 Rops-Chr2 71814711 71816693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03923 36 276 Homeobox Transcription Factor Family AT3G01470 44.578 1.86e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g03923 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03923 - - cave:132174717 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03923 2 71814711 71816693 Rops2g03923 2 71814711 71816693 ECH