Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03918 ATGGAGGATAAAAAGCTTAGTTTGCTCTTCGTTTGTGTATTTTATCTTGCTGCAGTCCCTCCCCTGAGGGCTGACATAGCTAACTTCGACAATGTCTGGCAGAAGCGATCTCTGGAAGCTAAACAAGCCGCAAACCATGCTTTCAAGCCAAACCCTGAGGAAGTCACTGTTGATTTCAATAAGCATGTGAACGAGGCGCTGGATGGTTCCAATAGCACAAGGAGGGGTTTATCCAAATACAACGGTCCATGCACGGCCACAAATCCAATTGACAGTTGCTGGAGATGTGATCCAAATTGGGAAAAGAACCGCAAGAGGCTAGCAGATTGTGTTCTTGGTTTTGGTCACGGCACAACTGGAGGCAAAGATGGCAAGTTTTATGTCGTCAATGATCCATCTGACAATGATCTCGTCAACCCAAAACCAGGGACTTTGAGACACGCTGTCATTCAAAAGGAGCCACTGTGGATCATTTTTGCACATGACATGGTCATCAGACTGAATGCAGAGCTTCTAGTAACCAGTAATAAGACGATAGATGGACGTGGTGCACTCGTTCATATTAGTGGTGGTGCTCAAATCACGTTGCAATATGTGAAAAACGTTATCATTCATGGGCTGCACGTCCGTGATATCAAAAAAGGTGGCGGTGGCCTCATCAGAGACTCGGTGGATCATTATGGATACCGCTCCATCAGTGACGGTGATGGAATTTCATTGTTTGGAGCTACTAATGTTTGGATAGATCATATCTCTTTGTCCAATTGTGATGATGGCCTTATTGATGCCGTAGAGGGATCAACAGCCATTACCATCTCCAACTGCCATATGACCCATCATAATGATGTTATGTTATTTGGTGCAAGTGATAGCTACTCAGGAGATCAAGTCATGCAAATAACTCTGGCTTTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTTCATGTTGTCAACAATGACTACACTCGATGGCTTATGTATGCCATTGGTGGTAGCCAACATCCCACCATCATCAGCCAGGGCAACCGCTTTATTGCTCCTATAAACCCAAACGCAAAAGAGGTGACAAAGCGGGATTATGCACCTGAAAGTGTGTGGAGGACATGGAATTGGAGATCAGAGGGTGACTTAATGATGAATGGGGCCTTCTTTGTTGAGTCAGGAAATAAGGTCGCAAATCCTCCCGACAAAGACATCAAAGCAAAGCCTGGGACAATGGCAGCAAGTCTCACTCGCTTTGCAGGTGCCCTAAGATGTGTAGTAAACAAGCCATGCTGA 1305 0.4552 MEDKKLSLLFVCVFYLAAVPPLRADIANFDNVWQKRSLEAKQAANHAFKPNPEEVTVDFNKHVNEALDGSNSTRRGLSKYNGPCTATNPIDSCWRCDPNWEKNRKRLADCVLGFGHGTTGGKDGKFYVVNDPSDNDLVNPKPGTLRHAVIQKEPLWIIFAHDMVIRLNAELLVTSNKTIDGRGALVHISGGAQITLQYVKNVIIHGLHVRDIKKGGGGLIRDSVDHYGYRSISDGDGISLFGATNVWIDHISLSNCDDGLIDAVEGSTAITISNCHMTHHNDVMLFGASDSYSGDQVMQITLAFNHFGQGLVQRMPRCRWGFFHVVNNDYTRWLMYAIGGSQHPTIISQGNRFIAPINPNAKEVTKRDYAPESVWRTWNWRSEGDLMMNGAFFVESGNKVANPPDKDIKAKPGTMAASLTRFAGALRCVVNKPC* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03918 434 SMART amb_all 162 359 IPR002022 -
Rops2g03918 434 Pfam Pectate lyase 172 353 IPR002022 -
Rops2g03918 434 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570
Rops2g03918 434 Gene3D - 87 427 IPR012334 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Rops2g03918 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Rops2g03918 434 PANTHER PECTATE LYASE 18-RELATED 40 432 IPR045032 GO:0030570
Rops2g03918 434 SUPERFAMILY Pectin lyase-like 88 425 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03918 Rops-Chr2 71755753 71758420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03918 1 434 Polysaccharide Lyase AT3G01270 55.672 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03918 K01728 - gmx:100801864 686.797