Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03909 ATGGCAAAACCCACTTCACCAAACGCCACGCGCCCTATCTTCTGGTCCATAATCCACAGCTTCAGATCAACGGCTCACATTCTCCCAAAAGCACTCCCTTCCGCGCGTGATCCACAGATCAATCTCTCTCTCTCTCTCTGTGAGTCTCTTCCATGGAATGGTAGATTTGAGGTAAAGAAGTTCCACATTGGTCGGGGTTTCTTTCTTGATAACATCGTGCTTCATTTTGCACTTCGTGTTTTAGCTCCCTGTTACTTTACATTCTCCAGTGCTAAGGCATTTCTCGCTGAAGTTGTTTTTTTTGGTCCGGGTCTCACAATGGGCAAGTCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAAAAGTCATCCAAATCAAACATTTCAAAAGGAAGAGAGAAGCTTGTTAATCAGAAAGAAGGAGTGGTTACTTCCAAATTGTCAGAAACTGGTTTGGCTTTAGAGCCAACCTCCAATACTATCACCAGACATGAGGAAGACCTGGACCTGGAGCATAAAGAAGAAGAAAATATCTTACCTGGAAATCAAGAAATTGACACAATGGGATCTATTCATCAAGATGCACCACTTGATCCAGAGAAAATGAGGCAGGAGGAAGCAGCTACAAAGGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGGCAAGCTGTTAGTACATTATGCTGTATGTATGGAATTGTCAAGTTACAAGCACTTGTTCGTGGAGGAAGAGTTAGACAGTCTGATGTTGGATTTGAAATTCATGAAAAATGCAATATATTGAAGCCTCTGGATGGCAAACCTGTCAATCCAATTGCTCTATCCACAAAAATTATGAAGCTGTCTGCAAATGCTTTCATCCGTAAGCTTCTTGCTTCATCAACTACAGTAACGGCCTTGCATTTGCAATATGTTCGTGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCACTTTTGGAAACCAATTCCCCAACCCAAGAAAATTCAGGATGCCAAGTCTCAGAGAAAGCAGGGTAATGTTTCAATTGGAGATTCTCAAATGAGCAAGTCAAAACGTACCCACAGAAAGCTTCCTACAGCAAACTTTGACTCAGTCCCAGCACAAGCAAATCCTGAATTTGAGAAACCAAAACGAAACACAAGGAAAGTTCCAAGCCAACCCTCGGATCCTCCTGCACAGGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTAAGAAAGGTTCATAACCCTGTTGTTGAGAATGTTGTACTGTCAGAAGTTGAATCTGAGACTCCAAAGCTGCATTTGGAAAAGGAAATAGTTACCTCAGGTCTTGGTGTTTCAGAACAAGAGGTCATTAGTTCTAATGAGAAGATTAAGAAGGAAGCAACATTAACCATTTCCAGTGTGCCAGATGTAGGAATTGCTCTTAATTCAGTTAGTAAGGAGGTATCTGACACTCCAAGCAGTTATCAAGTGACTGCAGAATCAAAGCCCTTGACAGAGATTACAAGCAAAGATAAAAACATTTCTGATAATGAAGTAAACCATGAACCCAGAGATTTACCAGAGACTATTCTTAAAGATGAAAATTCTCACTTAACAAATGGTGATTTGAGTCACAAGGAAGATCCAACAGGCAGTGAGAACCAGAAACCCACCCGAAAAGCCTCCCTTGGAGCAAAGCAGGAACATGCGGAGAATGGTTTACAGAACAGTCCAACTTTACCGAGCTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAGGGTACAAGGATCCCCGAGATTTGGACAAGATGGAAGTGAGAGAAACAACCATGCCAGGCGACATTCTCTGCCTTCTTCAACTAACAACAAAATCAGTTCGCACTCACCTAGGACACAGAGACCAGTTCAGGCAGGTGGCAAAGGGGGCCACAGAAATGACAAAACTGTATCATCATCTAGAGATGGGAATGGAAAGGTTATTCAAGCAGAATGGAGGAGGTGA 2073 0.4284 MAKPTSPNATRPIFWSIIHSFRSTAHILPKALPSARDPQINLSLSLCESLPWNGRFEVKKFHIGRGFFLDNIVLHFALRVLAPCYFTFSSAKAFLAEVVFFGPGLTMGKSPGKWIKTVLFGKKSSKSNISKGREKLVNQKEGVVTSKLSETGLALEPTSNTITRHEEDLDLEHKEEENILPGNQEIDTMGSIHQDAPLDPEKMRQEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVSTLCCMYGIVKLQALVRGGRVRQSDVGFEIHEKCNILKPLDGKPVNPIALSTKIMKLSANAFIRKLLASSTTVTALHLQYVRGDPNSVLSWLERWSASHFWKPIPQPKKIQDAKSQRKQGNVSIGDSQMSKSKRTHRKLPTANFDSVPAQANPEFEKPKRNTRKVPSQPSDPPAQENPQSELEKVKRSLRKVHNPVVENVVLSEVESETPKLHLEKEIVTSGLGVSEQEVISSNEKIKKEATLTISSVPDVGIALNSVSKEVSDTPSSYQVTAESKPLTEITSKDKNISDNEVNHEPRDLPETILKDENSHLTNGDLSHKEDPTGSENQKPTRKASLGAKQEHAENGLQNSPTLPSYMAATESAKAKLRVQGSPRFGQDGSERNNHARRHSLPSSTNNKISSHSPRTQRPVQAGGKGGHRNDKTVSSSRDGNGKVIQAEWRR* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03909 690 ProSiteProfiles IQ motif profile. 205 233 IPR000048 GO:0005515
Rops2g03909 690 MobiDBLite consensus disorder prediction 560 576 - -
Rops2g03909 690 MobiDBLite consensus disorder prediction 507 690 - -
Rops2g03909 690 MobiDBLite consensus disorder prediction 354 436 - -
Rops2g03909 690 Gene3D - 202 252 - -
Rops2g03909 690 MobiDBLite consensus disorder prediction 507 526 - -
Rops2g03909 690 ProSiteProfiles IQ motif profile. 229 251 IPR000048 GO:0005515
Rops2g03909 690 Pfam Protein of unknown function (DUF4005) 588 667 IPR025064 -
Rops2g03909 690 MobiDBLite consensus disorder prediction 527 554 - -
Rops2g03909 690 Pfam IQ calmodulin-binding motif 207 226 IPR000048 GO:0005515
Rops2g03909 690 Pfam IQ calmodulin-binding motif 229 246 IPR000048 GO:0005515
Rops2g03909 690 PANTHER IQ-DOMAIN 5-RELATED 107 649 - -
Rops2g03909 690 MobiDBLite consensus disorder prediction 638 657 - -
Rops2g03909 690 SMART iq_5 227 248 IPR000048 GO:0005515
Rops2g03909 690 SMART iq_5 204 226 IPR000048 GO:0005515
Rops2g03909 690 MobiDBLite consensus disorder prediction 591 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03909 Rops-Chr2 71653305 71661084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03909 107 690 IQD Protein Family AT1G74690 45.082 3.04e-130 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03909 - - gmx:100794636 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01038 1 24171464 24178220 Rops2g03909 2 71653305 71661084 ECH
Rops2g03909 2 71653305 71661084 Rops2g03909 2 71653305 71661084 ECH