Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03906 ATGGGAAATTGTTTTAGAGCTCGTCCCAAGGTTGATAACACTCCGAACTCCCAACCCAGTTCTGATATTACGAAGGGTGCTCGCAGAAGCACCCAATTGTTAGCTCATTCAGGTCCAACAACAGTGCATGGATACAGTGATGAAGGTAAACCTGGGATTCTCCCAACTCCAAGATCTGAAGGGGACATACTTTCCTCCCCACATTTAAAAGCTTTCACATTTAATGAGCTTAAGAAGGTCACTAGAAATTTCCATCGTGATTGTCTAATTGGAGAAGGGGGATTTGGTTATGTCTATAAGGGGTGGATTGATGGTCAATTCCTTAGGGCTTCAAGTCCTGGACATGGAATGGTTGTAGCCGTTAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTGATCATCCAAATCTTGTTAAACTTATTGGATACTGCCTGGATGGGGATAACCGGCTTCTAGTGTATGAGTACATGCCCAATAGAAGCTTGGAAAATCATCTATTTCGCAAGGACACACAACTACTTCCTTGGGCAACAAGAGTCAAAGTTGCTATTGGTGCGGCTCGTGGTCTCACCTTCCTACATGACTCTAAGCAACAAATTATTTACCGTGATTTCAAGGCTTCTAATATTCTATTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTCATGTTTCCACTCAAGTCCTGGGCACTCAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTGACTGCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCGGGGCGCCATGCTGTTGATAAAACAACATATGGAGTGGAACATAATCTGGTAGATTGGGCAAGACCCTATTTGGGTGATAGGAAGAAGTTGTTCAGAATTATGGACACCAAGTTAGAAGGACAGTACCCACAGAGGGCAGCTTATACAGTTGCAATTGTTGCATTACAATGTATTAGTGAGGCCAAGATTAGACCACAGATGCCTGAGGTTCTGGCCACCTTGGAACAGCTACCAGTCATCAGACATTCAGCTAGCCCATCTAGAGCACCAGACAAGTCCATGACAAGTCCCATGAGAGAGAGGGTCTGA 1176 0.4439 MGNCFRARPKVDNTPNSQPSSDITKGARRSTQLLAHSGPTTVHGYSDEGKPGILPTPRSEGDILSSPHLKAFTFNELKKVTRNFHRDCLIGEGGFGYVYKGWIDGQFLRASSPGHGMVVAVKKLKPEGFQGHKEWLSELNYLGQLDHPNLVKLIGYCLDGDNRLLVYEYMPNRSLENHLFRKDTQLLPWATRVKVAIGAARGLTFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSHVSTQVLGTQGYAAPEYIATGRLTARCDVYSFGVVLLELLSGRHAVDKTTYGVEHNLVDWARPYLGDRKKLFRIMDTKLEGQYPQRAAYTVAIVALQCISEAKIRPQMPEVLATLEQLPVIRHSASPSRAPDKSMTSPMRERV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03906 391 FunFam Serine/threonine-protein kinase BIK1 54 169 - -
Rops2g03906 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Rops2g03906 391 Gene3D Transferase(Phosphotransferase) domain 1 170 379 - -
Rops2g03906 391 PANTHER OS01G0588500 PROTEIN-RELATED 29 366 - -
Rops2g03906 391 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Rops2g03906 391 CDD STKc_IRAK 90 366 - -
Rops2g03906 391 Gene3D Phosphorylase Kinase; domain 1 56 169 - -
Rops2g03906 391 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 170 377 - -
Rops2g03906 391 MobiDBLite consensus disorder prediction 10 39 - -
Rops2g03906 391 SUPERFAMILY Protein kinase-like (PK-like) 62 364 IPR011009 -
Rops2g03906 391 MobiDBLite consensus disorder prediction 372 391 - -
Rops2g03906 391 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03906 391 Pfam Protein tyrosine and serine/threonine kinase 89 357 IPR001245 GO:0004672|GO:0006468
Rops2g03906 391 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03906 Rops-Chr2 71565167 71568616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03906 70 386 Glycoside Hydrolase AT3G07070 50.156 6.56e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops2g03906 PK_Tyr_Ser-Thr 8.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03906 - - gmx:100791844 609.757