Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03897 ATGGATGGAGATGATGATCTCCACCACCACCACCACCACCACCACCACCACCACCACCAACACCGTCCAAACTTCCCATTCCAGCTTCTTGAGAAGAAAGAAGACCAAGAAGGCGCTTCTTGCTCTAGCTCCTCCCCATATCCTTCCCTTGCAATCTCAGCAGAACCCAGCACATCTAATTCAAACCGATCCAACCAGCTGGCTGTCGTACCAACCACCGAGCCTTTGAACAAAAAGCCACCGCCGAAACGAACTTCCACCAAGGACCGCCACACCAAAGTGGAGGGCCGTGGCCGCCGCATCCGAATGCCAGCACTCTGCGCCGCCCGAGTTTTCCAACTCACCCGAGAACTCGGCCATAAATCCGACGGTGAAACCATCGAGTGGCTCCTCCAGCAAGCTGAACCCGCCGTCGTCGCCGCCACCGGCACGGGAACTATCCCCGCTAACTTCACCTCACTCAACATATCTCTCAGAAGCTCAGGCTCTTCCATGTCGGTTCCATCTCAGCTAAGATCCTCGTACTTCAACCCAAACTTCTCGGTTCAACAACGTAGGACCTTGTTCCCAGGAATAGGGTTATCCTCGGACAACAGCAACACCTCCACGCTTCTGAATTTCCAATCCAATAACCTAACCGCCGGCATGTTGCAGACCAAGCAAGAACCCTCTTCGTCCACGTTGGATTTGTCGGAGACAAGCGCGGAAGAGGGTTTGGGAAGGAAAAGAAGACAACCTACGGAGCAAGACTTGTCTTCAACGCAACATCAAATGGGGAATTATCTGCTGCAGTCGAGTGCAGGTGCGATTCCTGCAAGTCACGCTCAGATTCCAGCGAATATATGGATGGTGGCGAATTCTAATAACCAAGTTATGAGTGGTGACCCTATATGGACATTCCCACCTGTTAATAACAGTGCCTTGTATAGAGGCACCATGTCAAGTGGGTTGCATTTTATGAACTTCCCAACACCTATGGCTTTGTTACCTGGTCAACAACTTGGTTCATCTGTCGGAGGAAACAGTGGAAGTGGGAATATGAATGAAGGTCATTTGAATATGCTTGCTGGGCTTGGTTCTTATCGTTCTGTTTCAGAGTCTCAACCAAGTGGGTCACAATCACATCGCGGTGGAAGCCATGATCGCCATGATACCACCTAG 1161 0.5116 MDGDDDLHHHHHHHHHHHHQHRPNFPFQLLEKKEDQEGASCSSSSPYPSLAISAEPSTSNSNRSNQLAVVPTTEPLNKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVVAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSVQQRRTLFPGIGLSSDNSNTSTLLNFQSNNLTAGMLQTKQEPSSSTLDLSETSAEEGLGRKRRQPTEQDLSSTQHQMGNYLLQSSAGAIPASHAQIPANIWMVANSNNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPGQQLGSSVGGNSGSGNMNEGHLNMLAGLGSYRSVSESQPSGSQSHRGGSHDRHDTT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03897 386 MobiDBLite consensus disorder prediction 218 233 - -
Rops2g03897 386 ProSiteProfiles TCP domain profile. 87 141 IPR017887 -
Rops2g03897 386 MobiDBLite consensus disorder prediction 218 255 - -
Rops2g03897 386 MobiDBLite consensus disorder prediction 362 386 - -
Rops2g03897 386 Pfam TCP family transcription factor 85 253 IPR017887 -
Rops2g03897 386 MobiDBLite consensus disorder prediction 1 98 - -
Rops2g03897 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 381 IPR005333 GO:0003700
Rops2g03897 386 MobiDBLite consensus disorder prediction 81 98 - -
Rops2g03897 386 MobiDBLite consensus disorder prediction 235 249 - -
Rops2g03897 386 MobiDBLite consensus disorder prediction 24 38 - -
Rops2g03897 386 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03897 Rops-Chr2 71427967 71429762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03897 78 333 TCP Transcription Factor Family AT3G47620 50.769 1.32e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops2g03897 TCP 3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03897 - - psat:127073804 512.686