Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03890 ATGAAAAAGCGGCAGGTGGTGATAAAAAGAGAAGTTGCAAAAACTTCATCTTCGGAGGGAAGAAACATTCGATATGGAGAGTGTCAGAAGAATCATGCAGCTTATAGTGGTGGCTATGCTGTGGATGGTTGCAGAGAGTTCATGGCTAGTGGAGGAGAAGGAACAGATGGGGCACTTACATGTGCTGCTTGCGGTTGCCACAGGAACTTCCACAAAAGGGAAGTGCGAAGTGCTGATTGA 240 0.4667 MKKRQVVIKREVAKTSSSEGRNIRYGECQKNHAAYSGGYAVDGCREFMASGGEGTDGALTCAACGCHRNFHKREVRSAD* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03890 79 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 76 - -
Rops2g03890 79 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Rops2g03890 79 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Rops2g03890 79 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03890 Rops-Chr2 71295499 71295738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03890 1 75 Zinc finger-homeobox gene family AT1G18835 75.000 3.15e-32 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops2g03890 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03890 - - pcin:129319329 132.494