Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03879 ATGGTGGAGGAGTTACCTCACACCCTCCTCTCTTTTCATTTTTTTCCCCTATACATCCTCTTCAGTATCTCAACAAGGATGGGAAGAGTTAAACTGAAGATAAAGAGATTAGAGAGCACAAGCAACCGACATGTGACTTATTCGAAGCGGAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTGTCAATACTATGTGACATAGATATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTACTGCAGGGAGAGCGCAGCAACATGGAGGAGGTCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGAGCAAGCAGTCAAACAGTGGAGGAATTAACTCATCAAGTGAGAGTTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTGGATAAGATCAATAACTTAGAACATCTTAGGCAAATGGAAGACTCACTCAGGGAATCAATCAATCAAGTGTGTTTACAGAAGGAAAATTTAGGAAAGCAACAATTAGTTTCGCTTGAATGTGCTAGCCAGTTGCAAGAAGGGATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAGTGATAATCATCAGTTGATGTTGCCCAGTGAACCAAAATTTCTGCCATTTAGTGATAATACCAATAGAGAAGCTCAGTGCTCCACTGACATTTCACTCCCAGGCTATCCTGGTTATATTGGGGGTAGCAAACTTGAGGTTGGCAGCTCTCCCCAGGTCACAACTTTGGGTCAGGGAGGTGGTGCCTTGAACGAGATAAATGGAACTCCTTACTTAAATATACAACGTTGTGAGCAGTTTTCATACCCTCCTCCTCCAGATATTGAGGAAAGGAAACATCAACCAACAATGAACAACAAATCAAACACTGTGGATTACCAAGTTAATAACAGCTTTGATCTGCCCAGATCACTGTTTGAAAATGGAAATCAGTTCTGGAATCCTGCTTCTGGGTCTTGTGGGATTCCCATGTATAATGAGAATGACTACCATAGGTAA 1143 0.4112 MVEELPHTLLSFHFFPLYILFSISTRMGRVKLKIKRLESTSNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNMEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGASSQTVEELTHQVRVLQAQLTEVHQRLSYWNNLDKINNLEHLRQMEDSLRESINQVCLQKENLGKQQLVSLECASQLQEGMTLPLMMAGLQESQPLSWLLNSDNHQLMLPSEPKFLPFSDNTNREAQCSTDISLPGYPGYIGGSKLEVGSSPQVTTLGQGGGALNEINGTPYLNIQRCEQFSYPPPPDIEERKHQPTMNNKSNTVDYQVNNSFDLPRSLFENGNQFWNPASGSCGIPMYNENDYHR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03879 380 CDD MADS_SRF_like 28 110 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops2g03879 380 Coils Coil 103 123 - -
Rops2g03879 380 ProSiteProfiles MADS-box domain profile. 27 79 IPR002100 GO:0003677|GO:0046983
Rops2g03879 380 SUPERFAMILY SRF-like 28 121 IPR036879 GO:0003677|GO:0046983
Rops2g03879 380 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 81 IPR002100 GO:0003677|GO:0046983
Rops2g03879 380 FunFam Agamous-like MADS-box protein AGL30 40 122 - -
Rops2g03879 380 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Rops2g03879 380 Coils Coil 140 160 - -
Rops2g03879 380 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Rops2g03879 380 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Rops2g03879 380 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Rops2g03879 380 Gene3D - 40 123 IPR036879 GO:0003677|GO:0046983
Rops2g03879 380 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03879 Rops-Chr2 71146290 71151557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03879 27 302 Type I MADS-box Gene Family AT2G03060 52.632 9.57e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops2g03879 SRF-TF 9.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03879 - - pvu:PHAVU_003G189100g 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03879 2 71146290 71151557 Rops2g03879 2 71146290 71151557 ECH