Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03877 ATGGCATTTTTGGGCCTTCTTTTATTGGGGTATCTCTCCTTGGGATCAAGTGTTTACGCGGACAGTGATGGTTGGATGGATGCTCATGCAACATTCTATGGAGGAGGTGATGCCTCTGGCACAATGGGTATGGTTCCATGCCAAAAGAGAGGAGGTATCAAGTTCACTATCAATGGCCATTCTTACTTCAACCTTGTCCTAATCACCAACGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCCATCAAAGGTTCAAGAACTAATTGGCAACCAATGTCAAGGAACTGGGGTCAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTTTCCTTTAAGGTCACCACAAGTGACGGACGAACCTTGGTTTGTAACGATGTTGTCCCTGATGGCTGGTCCTTTGGCCAAACCTTCACAGGGCAACAATTCCCTTAA 438 0.4635 MAFLGLLLLGYLSLGSSVYADSDGWMDAHATFYGGGDASGTMGMVPCQKRGGIKFTINGHSYFNLVLITNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTLVCNDVVPDGWSFGQTFTGQQFP* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03877 145 PRINTS Expansin signature 51 63 IPR002963 GO:0009664
Rops2g03877 145 PRINTS Expansin signature 127 143 IPR002963 GO:0009664
Rops2g03877 145 PRINTS Expansin signature 98 119 IPR002963 GO:0009664
Rops2g03877 145 PRINTS Expansin signature 63 84 IPR002963 GO:0009664
Rops2g03877 145 PANTHER EXPANSIN-A15 17 43 IPR002963 GO:0009664
Rops2g03877 145 SUPERFAMILY PHL pollen allergen 49 141 IPR036749 -
Rops2g03877 145 Pfam Expansin C-terminal domain 53 130 IPR007117 -
Rops2g03877 145 Gene3D - 51 144 IPR036749 -
Rops2g03877 145 PRINTS Expansin/Lol pI family signature 35 51 IPR007118 GO:0005576
Rops2g03877 145 PRINTS Expansin/Lol pI family signature 127 141 IPR007118 GO:0005576
Rops2g03877 145 PRINTS Expansin/Lol pI family signature 89 103 IPR007118 GO:0005576
Rops2g03877 145 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 62 141 IPR007117 -
Rops2g03877 145 FunFam Expansin 52 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03877 Rops-Chr2 71140577 71142129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03877 1 43 Expansin Gene Family AT2G03090 53.488 1.15e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03877 - K20628 egt:105961626 204.527