Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03876 ATGGAAAATGTTTCAGTCCTATCTAAGGAAGAGGATCAGATGGATTTGCCTCCTGGATTTCGGTTTCACCCTACTGATGAAGAGCTTATAAGCCATTACCTTTACAAGAAGGTTGTTGATACCAACTTCTCTGCCAGGGCCATTGGAGAGGTGGACCTCAACAAGTCTGAACCTTGGGATCTGCCATGGAAAGCTAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACAGGATTGAGGACCAACAGAGCCACAGAAGCAGGGTACTGGAAGGCTACAGGGAAAGACAAGGAGATTTTCAAAGGAAAATCGCTGGTTGGAATGAAGAAAACTCTAGTTTTCTACAAAGGAAGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCATGAATACAGACTTGAGGGAAAATTCTCTGTTCACAACCTCCCTAAAGCTGCAAAGAACGAGTGGGTTATTTGCAGGGTGTTTCAAAAGAGTTCAGCTGGGAAGAAAACTCATATTTCTGGGATAATGAGGTTGGACTCTTTTGGGAACGAATTGGGTTCTTCTGGTGGTCTACCACCCCTCACAGATTCCTCACCTTCCATTAACAAGACCAAAGCACTGTCTGATTCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGGCGGGATCCTTGATTCCTTCACCAACTCCATTTATGGGGTTTCTTCAAATCCATTAGACATTCTTCCAAGAATGCCACCTTCTGCCTCATTATACACTACTCAAGGTGTTCAAGCCCCAGCTAATTTTCCATTTTCCGATTCTGTTTACACTATGCAGGACCATGCCATCCTGAGAGCCTTATATGAAAACAATGGATCAAACTTGACCAATGGTTTCAAGACAGAGAGGGAGATGGTCAGTGTCTCACAGGAAACAGATCTGACAACTGATATGAATGTTGAAAACTCTTCAGTGGTATCAAATTTTGATATGGGTAGGAGGCCCTTTGAGAATCAGCATCATCCACCTGCTTCTGTTGCAGCAGGGGACCTTCATGGTTTGTGGAATTACTAA 1083 0.4367 MENVSVLSKEEDQMDLPPGFRFHPTDEELISHYLYKKVVDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDSFGNELGSSGGLPPLTDSSPSINKTKALSDSAYVPCFSNPIDVQRNQGGILDSFTNSIYGVSSNPLDILPRMPPSASLYTTQGVQAPANFPFSDSVYTMQDHAILRALYENNGSNLTNGFKTEREMVSVSQETDLTTDMNVENSSVVSNFDMGRRPFENQHHPPASVAAGDLHGLWNY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03876 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 275 - -
Rops2g03876 360 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Rops2g03876 360 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Rops2g03876 360 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Rops2g03876 360 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Rops2g03876 360 FunFam NAC domain-containing protein 100-like 25 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03876 Rops-Chr2 71096282 71098244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03876 14 360 NAC Transcription Factor Family AT5G07680 59.483 1.41e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g03876 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03876 - - lja:Lj0g3v0155359.1 618.231