Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03852 ATGTCAGAACAGGAAACACATTCCTGTGGCTTACTATTATTCTTTTCCTTGATCATTCTTTTAGGTAAAGTTGTAAACGGGGATTCTTTGGATACAGACAAACAGGTTCTGCTGAAGCTGAAAACGTACCTTGACAATAAAACTCTTGCAGACCAAGGAAGGTACATATATTGGAACACCACCAGCTTCAATCCTTGTGAATGGCAAGGAATTTGGTGTAGCACAGCGAAAAGAGTGGTTGGCATAGACCTTTCTAACAGTGACATCACTGGGGAGATATTTCAGAACTTCTCACAGCTCACCGAACTCACACACCTTGATCTCTCTCAGAACACACTCTTTGGAGAGATTCCTGAGGACTTGAGGCGCTGCCACAAGCTTGTGCATCTCAACCTCTCCCATAATATTCTTGATGGAAAGCTGAACTTGACTGGTTTGACAAACTTGCAAACACTGGACTTGTCGGTTAATAGATTTCATGGGGAGCTTGGGTTGAATTTCCCTGCCATTTGTGATAATTTAGGCACTTTGAATATCTCAGGTAATAACATAACTGGTAGGATTGATAACTGCTTTGATCAATGTCCCAAGTTGCAGTACTTGGATTTGAGCACCAACAAACTGAGTGGGGGCATATGGATGGAATTTGCAAGGCTCAGAGAGTTTTCTGCTGCAGAGAATCATCTCAGTGGGAGCATTCTTTCAGAAGCTTTTCCATGGAATTGTAGCCTTGAACAACTAGACCTTTCTCAAAATGATTTTGTTGGTATGGTTCCCAAAGAGGTTGCTAACTGCAAGAATTTAAGTATTCTGAATCTTTCCACCAACGATTTTGCTGGGGGTATTCCCATTGAAATGGGATCCATTTCAGGCCTCAAAGCATTATACTTGGGAAGCAACAACTTTTCAAATGAGATTCCAGAGACCCTTCTGAACTTGACCAATTTGGTTTTCTTGGATTTGAGCAGAAACGGATTTGGTGGGGACATACAAAAGATATTTGGGAAGTTTAAGCAGGTGAGTTTTCTTCTATTGCACTCCAATTCTTACACTGGAGGATTGATATCATCAGGAATTCTTACATTGCCAAACATTCAGCGGTTAGACCTAAGCTTCAATAACTTTTCAGGTCCATTACCTGTTGAAATCTCTCAGTTGTCAAGTCTGAAATTTTTAGTGTTATCATACAACCAGTTCAATGGATCTATTCCACCCGAATTTGGGAATATGACTGGCCTGCAAGCACTTGACCTTGCCTTCAACAATTTGAGTGGGTCAATACCACCAAGCCTTGGGAACTTGAAGTCCCTTTTATGGTTGATGCTTGCAGATAATTCATTAACTGGAGGAATCCCCCCAGAGTTGGGAAACTGTACAAGCTTGTTATGGTTAAACCTTGCCAACAATAAGCTCTCTGGAAGTTTTCCTTCTGAATTGTCTAAAATTGGAAGGAATGCCATGATCACATTTGAATCAAATAGGCAAAATGATGGAATGGTTGCTGGTTCTGGTGAATGTTTAACAATGAAGAGATGGATACCTGCACATTACCCTCCATTCAGCTTTGTGTATGACATCTTAACAAGGAAAAAATGCAGAGGCCTTTGGGACCAATTGCTCAAAGGATATGGTATTTTCCCGTTTTGCACACCTGGTTCCTCCTTTCGCTTACCCTTGATATCAGGGTATGTTCAGTTAAGTGGGAACCAGCTCACTGGTGAAATCCCTTCAGAGATTGGGACAATGGTGAACTTCAGTTTGTTGCACTTGGGGTTCAACAACTTCTCTGGGAAATTCCCTCCAGAGATGGCAAGTATTCCACTTGTGGTCTTGAACATGACAAGAAACAAGTTTTCAGGTGAAATTCCACAGGAAATTGGCAACATGAAATGTTTGCAGAATCTTGATTTGTCTTACAACAATTTTTCTGGGGCATTTCCCACAAGTTTGAACAACTTGGCTGAGCTTAGCAAGTTCAACATGTCATACAATCCCTTCATATCTGGTGTCGTCCCATCAACTGGACAATTTGTTACTTTTGATAAAGAGTCATATCTAGATGACCCCCTCTTGATCCTTCCCAAGTTCATTGGTAACACCACAAGCGATAGAAACACCACTTTTCACAAAGACCAGGAAAAAAAGCCCTCAAAATTGTCTGTGTTTTTGGTGTTTTTAATAATAACACTGGTTTTCATGGTATTTGGGATTCTTACTATAGTAGTCTGTGTAATGGTGAAAAGCCCATCAGAGGAACCAAGATATCTCTTGAAGGATACTAAACAGTGGCATGAATCCAGCAGCTCTGGATCCTCACCATGGTTGTCTGATACAGTTAAGGTCATCCGTTTGAACAAGACAGCTTTTACATATGCTGACATTTTGAAAGCAACAAGAAGCTTCTCAGAGGACAGAATTATAGGAAAAGGTGGATTTGGAACAGTGTACAAGGGAGTTTTCACAGATGGTAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGACTTGAGGGTGAAAAGGAATTCAGAGCTGAAATGGAAGTTCTAAGTGGTCATGGTTTTGGTTGGCCTCATCCAAACCTGGTCACACTCTATGGATGGTGCCTAAATGGTTCAGAGAAGATACTTGTATATGAGTACATAGAAGGTGGAAGCTTGGAGGATCTAGTAACTGATAGAACACGTTTGACATGGAAGAGGAGGCTACAAGTGGCAATTGATGTGGCACGTGCACTAGTCTATTTACACCATGAATGTTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGTAATGTGCTACTAGACAGAGATGGTAAGGCCAAAGTTACAGATTTTGGACTTGCTAGAGTGGTTGATGTTGGAGATAGCCATGTCAGCACAATGGTAGCTGGGACAGTGGGTTATGTTGCACCAGAATATGGACAAACATGGCAAGCTACAACAAAAGGAGATGTGTATAGTTTTGGGGTGTTGGTTATGGAGCTTGCAACAGGTAGGCGTGCAGTGGATGGAGGGGAAGAGTGTTTGTTGGAATGGGCTAGGCGTGTCATGGGTTATGGACAACATCATCATCATGGGTTACGGCGTTCTGTACCAGTTTTGCTAATGGGTTCTGGGCTAGTTGGTGGAGCAGAGGAGATGGGTGAATTGCTAAGAATTGGGGTGAAGTGTACAGCTGAGGCACCACATGCTAGGCCTAACATGAAGGAGGTTCTGGCTATGTTGATTAAGATATCCAACCCCTCAAGTTATGGACACTTTGTTTAG 3270 0.4199 MSEQETHSCGLLLFFSLIILLGKVVNGDSLDTDKQVLLKLKTYLDNKTLADQGRYIYWNTTSFNPCEWQGIWCSTAKRVVGIDLSNSDITGEIFQNFSQLTELTHLDLSQNTLFGEIPEDLRRCHKLVHLNLSHNILDGKLNLTGLTNLQTLDLSVNRFHGELGLNFPAICDNLGTLNISGNNITGRIDNCFDQCPKLQYLDLSTNKLSGGIWMEFARLREFSAAENHLSGSILSEAFPWNCSLEQLDLSQNDFVGMVPKEVANCKNLSILNLSTNDFAGGIPIEMGSISGLKALYLGSNNFSNEIPETLLNLTNLVFLDLSRNGFGGDIQKIFGKFKQVSFLLLHSNSYTGGLISSGILTLPNIQRLDLSFNNFSGPLPVEISQLSSLKFLVLSYNQFNGSIPPEFGNMTGLQALDLAFNNLSGSIPPSLGNLKSLLWLMLADNSLTGGIPPELGNCTSLLWLNLANNKLSGSFPSELSKIGRNAMITFESNRQNDGMVAGSGECLTMKRWIPAHYPPFSFVYDILTRKKCRGLWDQLLKGYGIFPFCTPGSSFRLPLISGYVQLSGNQLTGEIPSEIGTMVNFSLLHLGFNNFSGKFPPEMASIPLVVLNMTRNKFSGEIPQEIGNMKCLQNLDLSYNNFSGAFPTSLNNLAELSKFNMSYNPFISGVVPSTGQFVTFDKESYLDDPLLILPKFIGNTTSDRNTTFHKDQEKKPSKLSVFLVFLIITLVFMVFGILTIVVCVMVKSPSEEPRYLLKDTKQWHESSSSGSSPWLSDTVKVIRLNKTAFTYADILKATRSFSEDRIIGKGGFGTVYKGVFTDGREVAVKKLQREGLEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILVYEYIEGGSLEDLVTDRTRLTWKRRLQVAIDVARALVYLHHECYPSIVHRDVKASNVLLDRDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRRAVDGGEECLLEWARRVMGYGQHHHHGLRRSVPVLLMGSGLVGGAEEMGELLRIGVKCTAEAPHARPNMKEVLAMLIKISNPSSYGHFV* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03852 1089 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Rops2g03852 1089 SMART LRR_typ_2 289 313 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 386 409 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 410 433 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 434 458 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 629 652 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 100 124 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 362 385 IPR003591 -
Rops2g03852 1089 SMART LRR_typ_2 146 177 IPR003591 -
Rops2g03852 1089 SUPERFAMILY Protein kinase-like (PK-like) 783 1077 IPR011009 -
Rops2g03852 1089 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 881 1084 - -
Rops2g03852 1089 Gene3D Ribonuclease Inhibitor 29 170 IPR032675 -
Rops2g03852 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 220 1078 - -
Rops2g03852 1089 Gene3D Phosphorylase Kinase; domain 1 765 880 - -
Rops2g03852 1089 Gene3D Transferase(Phosphotransferase) domain 1 881 1085 - -
Rops2g03852 1089 Gene3D Ribonuclease Inhibitor 171 215 IPR032675 -
Rops2g03852 1089 FunFam Putative LRR receptor-like serine/threonine-protein kinase 337 498 - -
Rops2g03852 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 923 935 IPR008271 GO:0004672|GO:0006468
Rops2g03852 1089 SMART serkin_6 801 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03852 1089 SUPERFAMILY L domain-like 53 353 - -
Rops2g03852 1089 ProSitePatterns Protein kinases ATP-binding region signature. 807 830 IPR017441 GO:0005524
Rops2g03852 1089 Pfam Protein kinase domain 802 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03852 1089 FunFam serine/threonine-protein kinase BRI1-like 2 760 880 - -
Rops2g03852 1089 Pfam Leucine rich repeat 147 208 IPR001611 GO:0005515
Rops2g03852 1089 ProSiteProfiles Protein kinase domain profile. 801 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03852 1089 Gene3D Ribonuclease Inhibitor 551 707 IPR032675 -
Rops2g03852 1089 CDD STKc_IRAK 807 1079 - -
Rops2g03852 1089 SUPERFAMILY L domain-like 357 673 - -
Rops2g03852 1089 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 236 330 - -
Rops2g03852 1089 Gene3D Ribonuclease Inhibitor 354 506 IPR032675 -
Rops2g03852 1089 Gene3D Ribonuclease Inhibitor 216 353 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03852 Rops-Chr2 70850955 70854639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03852 66 1076 Receptor kinase-like Gene Family AT1G55610 32.888 5.09e-155 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Rops2g03852 Pkinase 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03852 - - gmx:100816573 1787.31