Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03839 ATGGAAGAAGATCAAGAATTCAAACACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCCTTGGAGGTCACATGAGGTCTCATATCACCAACTTGTCAACTGAGAAAGAGGAAAGAGAAAAGCTTGCTAACAATGGTGGAGGTTATACTACAGGTTCTGAAGCTGCAACTAACCCTGGCTATGGTCTCAGGGAGAATCCCAAGAAGACTTGGAGAATTGCAGATTCAAGTGAAGACACTCTTTTGGTCTCTGACAAGTTCTGCAAGGAGTGTGGCAAAAGTTTCCACTCTTGGAAAGCTTTGTTTGGCCACATGAAATGCCATTCAGAGAAAGAAAGAGTTTCAAACAGCTTGGAGGATCAAGATTCATGGACTAATAATAATGGTAATGCTAGTCAGAAGCTTGTTATGGATAGCCAATCTGACAATGAAACCACTGCTCCAAGTAGAAGAAGAAGATCAAAGAGAAGAAGAACAAGGTACACTGTTTCTGCTGCTGCAACTTCTTCTGTGTCTTTTGCCAATCCTTCTTCTTCTCTTTCTGAAGTTGAGCAAGAGCAAGAAGAGGTTGCAATGAGCTTGATGATGCTTAGTAGGGATATGAGTCCTTGGAGTGGTCTTCATTCTGTTGCTGAGTCCTCTGATAATAACTCTGCTAACTTCGAAGCTCGATCTTCAGTTAGAACTAATCTGGTTACTAAAATTGAGGGTAACAACAAGAAGCATACCCCTACTCTCAATATAGCAAAAAAGATCAAGCAAAATGACAAGAAGAAGTGGGAGTTTGGCAATTCGGGTTCTGAAAATTTCAACTCTGAAGGGAAAAGTTCAGAACTTTTGGCTACTGAGTTTCCTGAAAGCGGATTTAGGATGAACAAAAGTGGAGTTTCCATTAAGGGGTTCATCAAGAATGAAAAAGCTAACAAGTCTGAGCTTGATTATCAGTCTGCATTAGAGGATTCTGAAGGTGAAAATGGGAAGAACAGAGTCAATGGAACACAATCGGTTTTATCAAAATCTGATGCTAACAAGTACAGTTCAATCAAGTTTATGGATTCTGAATTGAAGTCAAATTCCCATAAGAATTGGGTAAACAAGCCAGAATTCAGCAAGAACTCTCATAAGAGAGGTAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAAGATCAAAGGTTGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCATTGAAACTGACATGTCTCCTGATCCAACAACTGAAAGCAAGCTCATGAAGAACAGTGACAGTGAATATATGATTGAACATGATGAACTAGGTGCTGGTTTTCATAATGAGAAAGACACTGTTAAGGAGTCCAAGAAGAGCAAAGGGCATGAGTGCCCAATTTGCCTTAAGGTTTTTCCATCTGGGCAAGCCTTGGGTGGCCATAAGAGATCTCATATGACTGGTGGGTCTGACAGTAGAAACTTCCAAACAGTTGCACTTCAAGAACCAGTCCCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCAGCAACAGATGAGGAAAGCAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGGCAACCACAAACAAGAGGCACTGATAGGCCTAATGTCTAGCTAA 1680 0.4125 MEEDQEFKHVCKFCSKSFPCGRSLGGHMRSHITNLSTEKEEREKLANNGGGYTTGSEAATNPGYGLRENPKKTWRIADSSEDTLLVSDKFCKECGKSFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNNNGNASQKLVMDSQSDNETTAPSRRRRSKRRRTRYTVSAAATSSVSFANPSSSLSEVEQEQEEVAMSLMMLSRDMSPWSGLHSVAESSDNNSANFEARSSVRTNLVTKIEGNNKKHTPTLNIAKKIKQNDKKKWEFGNSGSENFNSEGKSSELLATEFPESGFRMNKSGVSIKGFIKNEKANKSELDYQSALEDSEGENGKNRVNGTQSVLSKSDANKYSSIKFMDSELKSNSHKNWVNKPEFSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETDMSPDPTTESKLMKNSDSEYMIEHDELGAGFHNEKDTVKESKKSKGHECPICLKVFPSGQALGGHKRSHMTGGSDSRNFQTVALQEPVPEIRDFLDLNLPAATDEESNSHADSNRPWWVVEGNHKQEALIGLMSS* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03839 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 471 493 IPR013087 -
Rops2g03839 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 382 409 IPR013087 -
Rops2g03839 559 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Rops2g03839 559 SMART c2h2final6 9 31 IPR013087 -
Rops2g03839 559 SMART c2h2final6 89 111 IPR013087 -
Rops2g03839 559 SMART c2h2final6 471 493 IPR013087 -
Rops2g03839 559 SMART c2h2final6 382 404 IPR013087 -
Rops2g03839 559 ProSitePatterns Zinc finger C2H2 type domain signature. 473 493 IPR013087 -
Rops2g03839 559 Gene3D Classic Zinc Finger 1 116 - -
Rops2g03839 559 ProSitePatterns Zinc finger C2H2 type domain signature. 384 404 IPR013087 -
Rops2g03839 559 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Rops2g03839 559 Gene3D Classic Zinc Finger 379 493 - -
Rops2g03839 559 MobiDBLite consensus disorder prediction 46 69 - -
Rops2g03839 559 MobiDBLite consensus disorder prediction 122 147 - -
Rops2g03839 559 SUPERFAMILY beta-beta-alpha zinc fingers 90 404 IPR036236 -
Rops2g03839 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Rops2g03839 559 Pfam C2H2-type zinc finger 382 406 - -
Rops2g03839 559 Pfam C2H2-type zinc finger 471 494 - -
Rops2g03839 559 Pfam C2H2-type zinc finger 9 31 - -
Rops2g03839 559 Pfam C2H2-type zinc finger 91 113 - -
Rops2g03839 559 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Rops2g03839 559 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 542 - -
Rops2g03839 559 MobiDBLite consensus disorder prediction 316 341 - -
Rops2g03839 559 MobiDBLite consensus disorder prediction 120 169 - -
Rops2g03839 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03839 Rops-Chr2 70667471 70669150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03839 405 529 C2H2 Transcription Factor Family AT1G26610 42.748 3.44e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g03839 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03839 - - gmx:102669916 740.339