Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03822 ATGGCGTCGTCGGCGAAACGATGCCACTACGAAGTGTTGGGTCTCCCCCGAGACTGCACCCCCGACGAGATCCGATCATCTTACCGGAGACTCGCCCTTCAGCGCCACCCCGACAAGCTCGTCCAATCAGGCCTGTCCCAAGCCGAAGCAACGGCACAGTTTCAGGAGCTGCAACAAGCTTACGAGGTCCTCTCCGACCCAAAGGAACGAGCTTGGTACGATTCCCACCGTTCCCAAATCCTTTTCTCTGATCCCAACTCGCTCGGTAACTCGGTCGTACCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCTGGATACTCCGATTCCGGAAAGGGTTTCTACAAGGTCTATTCCGACGTCTTCAACAAAATCCACGCCAATGAACTCAATTTCGCGAACAAGATGGGTATTGGTGTTGATTCTGTTCGACAAGCCCCTGTTATGGGAAATTTGGATAGCCCTTATGCTCAGGTCACAGCTTTTTATAGTTATTGGTTAGGGTTTTCGACGGTTATGGATTTTTGTTGGGTTGATGAGTACGATGTAATGGCCGGTCCGAACAGGAAATCGCGGAGGTTGATGGAGGAAGAGAACAATAAGGTGAGGAGGAAGGCGAGGAAGGAGTATAATGAGACTGTGAGGAAATTGGCTGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAAGACTGTGGAGATGGAGAAGAAGAAAGAGGAGGAGAGGGAGAGGAAGAAGAGATTGGAGAAAGAGAGGAAGGAGAAGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGAGGAGGAAGAGGATGTGGTGGTGGAGGATTGGTTTGAGGAGATGGAGGGGAAGAAGGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAACCATGAGCAGTCTAAGAAGCACAAGGAGAAAGTTGCGGAGTTCAAGGATTCAATTGCTGATGAAGAGGATTTGGATGAAGAGGTGGAAGGAGAAGGAGAGAGATTGGAAAGTGAGGAGGATGGAATCGGGGTGAATGATGATGATCAATTGGAGGAGAGGATTAGAGATGGTCTTAATGTTGCTGAAGATGAGACTGTAAATTGGGTTGAACTGAATGATGATGATGATGAATTCTTTGATGCCCCGCATGCAAAAGAGGAGGAGGAGGAGGCTGATGTGTCTGTCGATGTTGATAATGATGATGATGATGAAATTGATGTTCTTGAAGCAATGGTGGCTGGGCACAAGAGCAGGAAACAACCCAAGGCTTCAGTAACTCCATCTCAAATTGAGAATGAGAATGAGAATGATGAAATTGGCTCTATGGAATATAACAACCGAAAGAGCTCAAGAAAGAAACGTGGAGCCAGGAAAGAGAAGGGTAGGAAAAATTGGGAAGAATCTCATGTGGCTGCTGTCAATGGCAGTTATGAGAATTTAAATAGTAATGGAAATGGTAATTCTGATGTTGAAGAGTCTAATTCCCAAAATTTTATGGAAAATGAGGATAATGGTAAAGAGAATGAGCAGGTAGGTAGAGGTAAGAAGAATTCAAATCAACCGGCTGATAAAAAAGGAACTTCAAAGGACACAAAAACCAAAGCAAAAAATTCATCCAAAGGAAGAAAAGCAAAGGGCACGTCAAAGAATCTTGGCAATATTTGTGAAGCATGTGGAGAAGAGTTTGAGTCAAGGAATAAATTACATAAGCATCTGGGCGATTCTGGGCATGCAGCAATTAAAAGTCGATAA 1794 0.4504 MASSAKRCHYEVLGLPRDCTPDEIRSSYRRLALQRHPDKLVQSGLSQAEATAQFQELQQAYEVLSDPKERAWYDSHRSQILFSDPNSLGNSVVPDLFSFFSNTVYSGYSDSGKGFYKVYSDVFNKIHANELNFANKMGIGVDSVRQAPVMGNLDSPYAQVTAFYSYWLGFSTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKVRRKARKEYNETVRKLADFVKKRDKRVIDMKVKKTVEMEKKKEEERERKKRLEKERKEKAMAYEEPDWAKVEEEEDVVVEDWFEEMEGKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSIADEEDLDEEVEGEGERLESEEDGIGVNDDDQLEERIRDGLNVAEDETVNWVELNDDDDEFFDAPHAKEEEEEADVSVDVDNDDDDEIDVLEAMVAGHKSRKQPKASVTPSQIENENENDEIGSMEYNNRKSSRKKRGARKEKGRKNWEESHVAAVNGSYENLNSNGNGNSDVEESNSQNFMENEDNGKENEQVGRGKKNSNQPADKKGTSKDTKTKAKNSSKGRKAKGTSKNLGNICEACGEEFESRNKLHKHLGDSGHAAIKSR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03822 597 MobiDBLite consensus disorder prediction 435 449 - -
Rops2g03822 597 MobiDBLite consensus disorder prediction 312 331 - -
Rops2g03822 597 Pfam Zinc-finger double-stranded RNA-binding 297 322 IPR022755 -
Rops2g03822 597 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Rops2g03822 597 MobiDBLite consensus disorder prediction 332 360 - -
Rops2g03822 597 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 597 IPR044648 -
Rops2g03822 597 MobiDBLite consensus disorder prediction 405 421 - -
Rops2g03822 597 PRINTS DnaJ domain signature 28 43 IPR001623 -
Rops2g03822 597 PRINTS DnaJ domain signature 49 69 IPR001623 -
Rops2g03822 597 PRINTS DnaJ domain signature 10 28 IPR001623 -
Rops2g03822 597 Gene3D DnaJ domain 1 87 IPR036869 -
Rops2g03822 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 326 IPR013087 -
Rops2g03822 597 Pfam DnaJ domain 9 74 IPR001623 -
Rops2g03822 597 SUPERFAMILY Chaperone J-domain 5 78 IPR036869 -
Rops2g03822 597 Coils Coil 237 264 - -
Rops2g03822 597 SMART ZnF_U1_5 294 328 IPR003604 GO:0003676|GO:0008270
Rops2g03822 597 MobiDBLite consensus disorder prediction 312 363 - -
Rops2g03822 597 MobiDBLite consensus disorder prediction 488 515 - -
Rops2g03822 597 ProSitePatterns Zinc finger C2H2 type domain signature. 569 591 IPR013087 -
Rops2g03822 597 CDD DnaJ 8 66 IPR001623 -
Rops2g03822 597 MobiDBLite consensus disorder prediction 386 566 - -
Rops2g03822 597 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Rops2g03822 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 567 596 IPR013087 -
Rops2g03822 597 MobiDBLite consensus disorder prediction 516 551 - -
Rops2g03822 597 SUPERFAMILY beta-beta-alpha zinc fingers 290 337 IPR036236 -
Rops2g03822 597 SMART c2h2final6 567 591 IPR013087 -
Rops2g03822 597 SMART c2h2final6 297 321 IPR013087 -
Rops2g03822 597 Coils Coil 193 213 - -
Rops2g03822 597 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Rops2g03822 597 Gene3D Classic Zinc Finger 287 347 - -
Rops2g03822 597 SMART dnaj_3 7 69 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03822 Rops-Chr2 70441294 70443633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03822 1 597 C2H2 Transcription Factor Family AT1G74250 52.006 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g03822 DnaJ 1.2e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03822 K09506 - gmx:100788305 823.157