Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03819 ATGTGCCATGAAATGGATGTAATACACACACCAGCTCAGAAGAGAACGCAGGTTACAGCAATGGCTTTCTTTGGTAGACTTGGGAATTTACTGAGAAGTGCTGCAAATAGGCAGATTAGTTCGGAGTTGCGTTCATCACCATCTATTTTCCAGGCTATACGATGCATGTCATCTGCTCCAAGCTCAAAGTTGTTTATAGGAGGTGTTTCGTATTCTACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAATTGTTGATGCAAGGATAATCATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTTACATACAGTTCAACTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAACTATGCTAATGAGAGGCCTCGTGGATTTGGTGGTGGTGGTGGTGGTTTTGGTGGTTCTTATGGAAACTCACCTTATGGTGCTGGAGGTGGCACTGGCTATGCAGGTGCTTATGGTGGCTCTCCATATGGTGGTGCTTCAAGTGGCGGTGGCTATGGTGGAAATGTTGATGGAGGTTATGGTGGTGGTGGATATGGTGGAGGCGGCTATGGATCAGGTGGCAATTATGGGGGCAGTGGCTCTGGCAATAACTATGCTGCTCCTGACAGTTTTGGAACCGGCAGTGCTGGTGGCAGTTTCGGTGGGAGTGGAATGAATTATGGGAATGATGGTAACTTTACAAGTGGAAACACTTACACTGGTGGAAGTAGTGGAGGCTATGGTGGTAACAGTGGGAATTTTGGTGATGCTGGTGGTGTAGGCAATCATGAAAGTGCTGCTGGTTTTGCTGGCAGTGATAATTATGTCAGTGCTGGTGATGGCAGCTCTGGCTTTGCCAGTAGTGGATTTGATGGAAGTGGCGTGGATGGCAGTGGTGGTACAGGTATTGGCACCAGCTCTTCTGGTGGATATGATGGAAATGGGGGTTTGGACCAATTGGACAGCAAAGACAGCAGCAATGGAGATGGAGATTCAGGAAGTTTTGGGGACTCGTTGGAAGGAAAATACAGGGATGATGATGATGATACTGATAATTTTGCCAAAAGGGCTTGA 1119 0.4692 MCHEMDVIHTPAQKRTQVTAMAFFGRLGNLLRSAANRQISSELRSSPSIFQAIRCMSSAPSSKLFIGGVSYSTDEQSLREAFSKYGEIVDARIIMDRETGRSRGFGFVTYSSTEEASSAIQALDGQDLHGRQIRVNYANERPRGFGGGGGGFGGSYGNSPYGAGGGTGYAGAYGGSPYGGASSGGGYGGNVDGGYGGGGYGGGGYGSGGNYGGSGSGNNYAAPDSFGTGSAGGSFGGSGMNYGNDGNFTSGNTYTGGSSGGYGGNSGNFGDAGGVGNHESAAGFAGSDNYVSAGDGSSGFASSGFDGSGVDGSGGTGIGTSSSGGYDGNGGLDQLDSKDSSNGDGDSGSFGDSLEGKYRDDDDDTDNFAKRA* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03819 372 MobiDBLite consensus disorder prediction 353 372 - -
Rops2g03819 372 SMART rrm1_1 63 136 IPR000504 GO:0003723
Rops2g03819 372 Gene3D - 51 188 IPR012677 -
Rops2g03819 372 MobiDBLite consensus disorder prediction 314 348 - -
Rops2g03819 372 SUPERFAMILY RNA-binding domain, RBD 58 168 IPR035979 GO:0003676
Rops2g03819 372 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 22 232 - -
Rops2g03819 372 MobiDBLite consensus disorder prediction 310 372 - -
Rops2g03819 372 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 32 169 - -
Rops2g03819 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Rops2g03819 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Rops2g03819 372 PRINTS Eggshell protein signature 177 192 - -
Rops2g03819 372 PRINTS Eggshell protein signature 205 215 - -
Rops2g03819 372 PRINTS Eggshell protein signature 58 74 - -
Rops2g03819 372 PRINTS Eggshell protein signature 256 274 - -
Rops2g03819 372 CDD RRM2_NsCP33_like 63 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03819 Rops-Chr2 70407293 70411141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03819 59 141 Eukaryotic Initiation Factors Gene Family AT2G36660 36.145 2.10e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03819 2 70407293 70411141 Rops2g03819 2 70407293 70411141 ECH