Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03814 ATGGCGACCCCATCTGGAATTTCAATGTTGCTTGCGAACCCATCGCCCGATTCTTCATCAGATCTTCCCGACGTCGTCATCCAAGTTCTCGATCTCAAGCTAAACGGCAACAGATACATGTTTTCTGCTAATGATGGGAAAATGAAACTGAAGGCTATTCTTCCTTCGAATCAATTCTCCGAGGTGCTCTCTGGGAAAATTCAGAACCTGGGTCTAATTCGGATCCTTGATTACGCTGTCAACCACATCCCCAATAAGTCTGACAAGTACCTTTTAGTCACCAAGTGTGAACCTGTTTCTCCTGCGCTTCCAATGGAGATTAAGAGTGAGGAAACTGGGATTCCTTTGAAGCCCAAAGAAGAGCCTGCAGTGAAGAGTGAAGGTGATATTGGCATTCTGTTGAAGCCAAAGCAAGAAGTAGTGTCCAAATCTGCTGCTCAGATTGTACATGAGCAACATGCAAATGTGGCTCCTGCTGCAAGAATGGCCATGACACGTAGGGTGCGTCCTCTTGTGTCCTTGAATCCTTATCAGGGTAACTGGACTATAAAAGTTAGTGTTACCAGTAAAGGGAACATGCGTACTTATAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAATGTGGAATTGACAGATGAAGATGGTACTCAAATTCAGGCTACCATGTTTAATGATGCTGCGAGGAAGTTTTATGACAGATTTGTTCTTGGAAAGGTTTATTATATTTCAAAGGGGACTTTGAAGGTTGCTAACAAACAGTTTAAAACTGTACAAAATGACTATGAAATGACATTAAATGAGAACTCTGAGGTGGAAGAGGTGGCCAATGAAGCAAGTTTTGTCCCAGAAACTAAATTTAATTTTGTACAGATTGATCAATTGGGTCCTTATGTCAATAAGAATGAGCTTGTTGATGTCATTGGAGTTGTTCAAAATGTGTCTTCAACAATGAGCATTCGAAGGAAGAGCAACAATGAGAGTATTCCAAAGCGTGATATTACTATTGCTGATGAAACGAAGAAGACAGTAGTAGTGTCCTTGTGGAATGAGCTTGCAACTAACATAGGTCAAGAGTTATTAGACATTGCTGATAAATCTCCAGTCGTTGCAATCAAATCCCTCAGGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTGCAGTTGTGATAAATCCAGACATACCTGAAGCAAAGAAACTAAGATGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGCTTCTGTAGGCTCTGGTTCAATTCCGACATCCAACAATGGAACTAGATCAGTGTACTCTGATCGTGTTTCACTTGCTCACATAACCACTAATCCATCATTGGGGCAAGACAAGCCTGCATCTTTCAGTATTAGAGGGTATATAAGTTTCATAAAGCCGGACCAGGCAATGTGGTATCGTGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCGTCGGTTCTGGGTACTGGTGTGAGGGTTGCCAGAAAAATGATGAACAATGCAATTTAAGATACATTATGGTTGCCAGAGTTTCTGATGCAAGCGGTGAGGCTTTTATCTCAGTCTTTAATGAGGATGCTGAGAAGATAGTTGGGTGCTCTGCTGATGAGCTAGATAACCTTAAATCCCAGGAGGGAGAAGATAATCCTTATCAACTGAAATTGAAGCAAGCTACTTGGGTTCCACATCTCTTCCGAGTTAATGTTTCTCAGAATGAGTATAATAATGAGAAGCGGCAAAGGATAACAGCACGGGCAGTTGTTCCTGTTGACTTTGCTGCGGAGTCAAAAATTCTTCTGGAAGATATATCAAAGATGATAACTTCTCATTAA 1848 0.4145 MATPSGISMLLANPSPDSSSDLPDVVIQVLDLKLNGNRYMFSANDGKMKLKAILPSNQFSEVLSGKIQNLGLIRILDYAVNHIPNKSDKYLLVTKCEPVSPALPMEIKSEETGIPLKPKEEPAVKSEGDIGILLKPKQEVVSKSAAQIVHEQHANVAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDRFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEASFVPETKFNFVQIDQLGPYVNKNELVDVIGVVQNVSSTMSIRRKSNNESIPKRDITIADETKKTVVVSLWNELATNIGQELLDIADKSPVVAIKSLRVGDFQGVSLSAISKSAVVINPDIPEAKKLRCWYDFEGKDAAMASVGSGSIPTSNNGTRSVYSDRVSLAHITTNPSLGQDKPASFSIRGYISFIKPDQAMWYRACKTCNKKVTESVGSGYWCEGCQKNDEQCNLRYIMVARVSDASGEAFISVFNEDAEKIVGCSADELDNLKSQEGEDNPYQLKLKQATWVPHLFRVNVSQNEYNNEKRQRITARAVVPVDFAAESKILLEDISKMITSH* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03814 615 CDD RPA1_DBD_C 454 610 IPR047192 -
Rops2g03814 615 FunFam Replication protein A subunit 280 419 - -
Rops2g03814 615 Pfam Replication factor-A C terminal domain 459 604 IPR013955 -
Rops2g03814 615 Gene3D - 422 611 IPR012340 -
Rops2g03814 615 FunFam Replication protein A subunit 425 611 - -
Rops2g03814 615 PANTHER REPLICATION FACTOR A 1, RFA1 181 574 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops2g03814 615 CDD RPA1_DBD_A 170 273 - -
Rops2g03814 615 Gene3D - 167 276 IPR012340 -
Rops2g03814 615 Pfam Replication factor-A protein 1, N-terminal domain 3 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops2g03814 615 CDD RPA1_DBD_B 303 409 - -
Rops2g03814 615 NCBIfam replication factor-a protein 1 (rpa1) 21 610 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops2g03814 615 SUPERFAMILY Nucleic acid-binding proteins 437 612 IPR012340 -
Rops2g03814 615 Gene3D - 281 421 IPR012340 -
Rops2g03814 615 Gene3D - 3 109 IPR012340 -
Rops2g03814 615 SUPERFAMILY Nucleic acid-binding proteins 169 277 IPR012340 -
Rops2g03814 615 SUPERFAMILY Nucleic acid-binding proteins 286 413 IPR012340 -
Rops2g03814 615 FunFam Replication protein A subunit 1 111 - -
Rops2g03814 615 Pfam Replication protein A OB domain 298 395 IPR031657 -
Rops2g03814 615 Pfam OB-fold nucleic acid binding domain 181 267 IPR004365 GO:0003676
Rops2g03814 615 FunFam Replication protein A subunit 167 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03814 Rops-Chr2 70393434 70396530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03814 3 615 Core DNA Replication Machinery Family AT5G08020 69.544 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03814 K07466 - gmx:100777091 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03814 2 70393434 70396530 Rops2g03814 2 70393434 70396530 ECH