Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03794 ATGGAATCTTGGAGCTATGTTTCTGAAGAAAAGGGGTATGTCTCTAACGACACACTCTCTCCTCCCAATACTCTTGGGAGAAGCAAAAATTCATTCTTGGGTTGGGAATTGAAAACCCCATGTAGTTTTTCCAACGACATCTTAGCTTTGGGTCAGCAAAATGTTGAGAATCAAAGTTCTGAGGAATTGGGTTTTCCTGAAACTTTGGGGAAACAGTTGTCTGATGATCTAATTGGCAGTGTTCCAAGCAGAAAGCTGGATGGTAGAATCCCTAGTAGTACTGTTATGGCTGCCCCAAATGCATTTTCTGAAAGACGGGACTCAAATTCCAAGCTTTCAAACTCTAATGGTGGGGATTCCCTCATCGATTTGAAGCTGGGACGAGTTGTTGATCATGCAGATGCCATTGATCCAGCATTTTCCAAGGGGGCACCCATTTTGTCTTCTTCTGAGTCATCAACACCCCCTAAGAGAGTGCGAGCTTCTGGGGTGCACTCACAAACTGCATATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGTAAAGACTATCATAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCACAGTTATAGTGAATGGCATTGAGCAAAGGTTTTGTCAGCAATGCAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGCCGCAAACGCCTTGCTGGCCATAATGAGCGTCGAAGAAAACCACAAGGGAACAATCACTCTGGAAAGTCCGGGAGGTTGCTTCAGCCATGTGGAGATAGCAGATTCCAGGGAGCCAAGCTAACACCAGCATCTTTTATCTGCCCAGAGATGCTCCCTAGTGGGGTCATGAGTTCTGAGAGATATGGAATAAGTGGCTTCAGGAGACCTATAAAAGCAGATTATGGGGCTGGCTTTTGGCATCTTTCTTCTATGCCAATAACTAATGGACATCCTATGTCAAGATCTCTATTTCCTTCCAATAACGAAAAACAATTCCCCTTCCTTCATGAAAATGGTGCCACATCCACTACAGAAAGCATCTTCTGTGACAACAATAGGCAATACACACCTACCTTTGGGGCCCAAAATTCTGGATTAAGATCACTATTCCAGGATACCTCCTTAGGAAGTGAGGACTTCAATGTTTTTGATACAGCATCAGTTGTTCAAGGATTATCGGGAATTTCAGACTCTTGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGCCAATCGTCAGAAATTCCCTTGGCTCACCCCTTGGTTATTCCAAGTAGCCATAGCCATCATCACTACAGCATGAGTCAGGTCTCTGAAAAGATAGGAGGAAGCTCGCAGAATTCTTCAAGCCGAGCGTCGGATAGGTTTCCATCAGAATTAAATCCTGCAGATGGAAGTAATCTCAATCCCGTATTGATATCAGACAACAATGATATTGTCAACTTTGAAATGGCAGATGGGATTTTCCAAGATTTGGATTTTGTGAATGTGAAAGATCGTCTTTGCTGTGAAGATGGTGCAACCATTAACTTGCTACAACTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAAACCTTGCAGATTTGCTTAGCACTTTGCTGCGGGGGAACTTCACATCATATGATCTAG 1659 0.44 MESWSYVSEEKGYVSNDTLSPPNTLGRSKNSFLGWELKTPCSFSNDILALGQQNVENQSSEELGFPETLGKQLSDDLIGSVPSRKLDGRIPSSTVMAAPNAFSERRDSNSKLSNSNGGDSLIDLKLGRVVDHADAIDPAFSKGAPILSSSESSTPPKRVRASGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQGNNHSGKSGRLLQPCGDSRFQGAKLTPASFICPEMLPSGVMSSERYGISGFRRPIKADYGAGFWHLSSMPITNGHPMSRSLFPSNNEKQFPFLHENGATSTTESIFCDNNRQYTPTFGAQNSGLRSLFQDTSLGSEDFNVFDTASVVQGLSGISDSCCALSLLSSQSQNSSSQSSEIPLAHPLVIPSSHSHHHYSMSQVSEKIGGSSQNSSSRASDRFPSELNPADGSNLNPVLISDNNDIVNFEMADGIFQDLDFVNVKDRLCCEDGATINLLQLSSQLQRVEHERQTLQICLALCCGGTSHHMI* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03794 552 Pfam SBP domain 171 244 IPR004333 GO:0003677
Rops2g03794 552 MobiDBLite consensus disorder prediction 235 257 - -
Rops2g03794 552 SUPERFAMILY SBT domain 169 248 IPR036893 GO:0003677|GO:0005634
Rops2g03794 552 MobiDBLite consensus disorder prediction 435 471 - -
Rops2g03794 552 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 102 468 IPR044817 GO:0003677
Rops2g03794 552 FunFam Squamosa promoter-binding-like protein 14 162 232 - -
Rops2g03794 552 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Rops2g03794 552 MobiDBLite consensus disorder prediction 1 25 - -
Rops2g03794 552 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Rops2g03794 552 MobiDBLite consensus disorder prediction 436 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03794 Rops-Chr2 70050313 70054796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03794 122 287 SBP-box Gene Family AT1G69170 55.090 8.81e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops2g03794 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03794 - - gmx:100817547 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03794 2 70050313 70054796 Rops2g03794 2 70050313 70054796 ECH