Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03788 ATGCAGGAAATACATTCCATTGGAGGTGGCGGCGGAGGAGGAGGTGGAGGTGGAGGAGGAAGGTTCTTCGGCGGCGGAGGAGACAGGAGGCTCAGACCTCACCACCACCACCACCAGAACCACCAGGCCTTGAAGTGTCCCCGTTGTGATTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGTGGTTGCCGCAAATCCAAACGCTCCAACAAAACGAAAAACTCAGAAGCCACCGCCGCTCCGCCGCTACCGGAGACGGAGAACAAGTCCAACTCTCATTCGAGCAGCGAGAGTTCAAGCCTCACTGCCGCCGCAACAACGGAGGCGGTGTCTGCTCCGACTTTGAACAACACTGACTCAAACAACAACAACATGCACGAATCCAAGTTGTTGATCCATGTGAACCCTTCAAACCCTTCTGGTATGGAAACGGCTTCTCTTGAACAAGGAGCAGGGGACTGTGGTATTTTCTCGGAGATTGGAACCTTCACCAACTTGATCACTTCCTCCAACGAAGCATTGGCGTTTGGATTCGGTAATGGTATCCCAGATGCGACGTCGTTTCAGTGGCAGCACCAGAAGGTGATAAGCACGAGCGATCATCATCATCAGTACCATCATCATGAAGAAGAATTGAAGTTGCCGGAGAATTTTAGTGCTCCTGGGTCGTTGCTAGATCACAGTGTTGATTTGTCAGTGTTGCAAAGTAAAAACGGCAACGGAGGATTTGGATCGTTGGATTGGCATGGTGGTGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAGGCTTACTGGACTCACTCTCACTGGTCTGATCACGACAATTCTACTCTCTTTCATCTTCCCTGA 951 0.5163 MQEIHSIGGGGGGGGGGGGGRFFGGGGDRRLRPHHHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKTKNSEATAAPPLPETENKSNSHSSSESSSLTAAATTEAVSAPTLNNTDSNNNNMHESKLLIHVNPSNPSGMETASLEQGAGDCGIFSEIGTFTNLITSSNEALAFGFGNGIPDATSFQWQHQKVISTSDHHHQYHHHEEELKLPENFSAPGSLLDHSVDLSVLQSKNGNGGFGSLDWHGGGADQGLFDLPNTVDQAYWTHSHWSDHDNSTLFHLP* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03788 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 219 IPR045174 GO:0003700|GO:0006355
Rops2g03788 316 MobiDBLite consensus disorder prediction 88 154 - -
Rops2g03788 316 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Rops2g03788 316 MobiDBLite consensus disorder prediction 103 154 - -
Rops2g03788 316 MobiDBLite consensus disorder prediction 1 44 - -
Rops2g03788 316 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Rops2g03788 316 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03788 Rops-Chr2 69839314 69840825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03788 28 316 C2C2-Dof Transcription Factor Family AT5G60850 43.234 2.51e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops2g03788 zf-Dof 3.3e-33 No_clan