Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03781 ATGGAGATTCCTCAAGCGCATCCTTGTGGAACAGAAGGAAGGAAACCGACGCATGATTTTCTGTCTCTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACGAAAGCTAGTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACCACCTTTAGCAGCACCAAATTCAGTTGAGCACCTCTTACCTGGCGGAATTGGGACTTACAGTATTAGCCACATTTCCTACTTTAATAATAATCAAAGGGTTCCAAAGCCAGAGCAATCCCTTTTCACTGTGCGTCAAGCAACTAGTACGGATAGAAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGCGGTTTCACTTTGTGGGAAGAGTCGGCAATAAAAAAGGGGAAGACAGGAAAGGAGAATAATGTGGGCGAGAAACCCATTGTAGGAGTGACAGAGTCTCCGGCAAAGCAAGGGCAGTGGACGTTGACGGAGCGAACATCACAGTCGTTATCTAACAATCGTCACAGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAAGGATTCTGCCCAGGATGGAGAGCTAGAAAACGAAGAAATATTTTTTCTTAAGAAAGAATCCTCGAATACCCAAAGAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAATACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGAAGCAAAATTAATGACAGGTTCCAGATGCTACGAGAGCTTATACCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTATATTCATTTTTTACAAGGGAAGGTGCATAAGTATGAAGGAAATAACGAGCCAGAAAAATTGATGCCATGGAGAAACCATGACAGGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAATAGTGGGTCAAGTCCATCTACAACATTGCTGTTTGCTTCGAACGTTGACGAGAAAAATATCACCATCTCCCCAACAATTCCCGGGAGTACTCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTTCAAGACAATGGATCATCAGTCTGGAATAATGAACAATGCTTTTCCAATTCCTGTTTCTTCACAACCAAATTTCTTCACTCCAACACAAATCAGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCAGAGAACACCGTATATCAACCTTCGTTGGAATCTCAGAGTATGACTGCTGCCAGTGAAAAGCTGAAAGAGAAAGAGCTTACTATTGACGGTGGTGCCATTAGCATATCAAGCGTGTACTCAAAAGGGTTGTTGGATACACTTACACATGCCCTGCAGAGTTCGGGGGTGGATTTGTCACAGTCTAGCATTTCAGTGCAAATTGAACTTGGTAAGCAAGCAAGCATCAGACCAACTGTACCAATGTCAATGTGTGGTGCTAAGGATGATGAAGTTCCTTCTGACAATCGAAGGATGATGCGCTCTAGAGTTGCTAGCTCTGAAAAGTCTGATCAAGCAGTAAAGAAGCTAAAGACGTGCAGAAGTTAA 1683 0.4355 MEIPQAHPCGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERVETKASAKEEATDEISSVVQKPPPLAAPNSVEHLLPGGIGTYSISHISYFNNNQRVPKPEQSLFTVRQATSTDRNDDNSNCSSYTSSGFTLWEESAIKKGKTGKENNVGEKPIVGVTESPAKQGQWTLTERTSQSLSNNRHSSFNSRSSSQTTGQKNQSFIEMMKSAKDSAQDGELENEEIFFLKKESSNTQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQGKVHKYEGNNEPEKLMPWRNHDRPAESFQPRGTNSGSSPSTTLLFASNVDEKNITISPTIPGSTQNVESGLSTATTFKTMDHQSGIMNNAFPIPVSSQPNFFTPTQISGPGGVVSQLTHRLASDAENTVYQPSLESQSMTAASEKLKEKELTIDGGAISISSVYSKGLLDTLTHALQSSGVDLSQSSISVQIELGKQASIRPTVPMSMCGAKDDEVPSDNRRMMRSRVASSEKSDQAVKKLKTCRS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03781 560 MobiDBLite consensus disorder prediction 518 560 - -
Rops2g03781 560 MobiDBLite consensus disorder prediction 245 278 - -
Rops2g03781 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Rops2g03781 560 SMART finulus 269 319 IPR011598 GO:0046983
Rops2g03781 560 MobiDBLite consensus disorder prediction 154 210 - -
Rops2g03781 560 MobiDBLite consensus disorder prediction 48 68 - -
Rops2g03781 560 Pfam Helix-loop-helix DNA-binding domain 265 314 IPR011598 GO:0046983
Rops2g03781 560 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 557 IPR044295 GO:0003700|GO:0006351|GO:0046983
Rops2g03781 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 325 IPR036638 GO:0046983
Rops2g03781 560 MobiDBLite consensus disorder prediction 20 44 - -
Rops2g03781 560 MobiDBLite consensus disorder prediction 528 560 - -
Rops2g03781 560 CDD bHLH_AtBIM_like 262 333 - -
Rops2g03781 560 MobiDBLite consensus disorder prediction 1 77 - -
Rops2g03781 560 MobiDBLite consensus disorder prediction 173 210 - -
Rops2g03781 560 Gene3D - 261 331 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03781 Rops-Chr2 69727049 69735144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03781 1 513 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.983 7.52e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g03781 HLH 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03781 - - gmx:100808016 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03781 2 69727049 69735144 Rops2g03781 2 69727049 69735144 ECH