Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03780 ATGGGTTCCCCAATGAAGCGCCTGAAATCGCAAGTGGAAGAAGATGATGATATGCAACAGGGTGTTTGTTGTGGGATTTGCTATGCGGAGCATGGGGTTTCGATCGCTGGTGAAATTGATAGCTGCAAGCACTATTTTTGCTTTGTTTGTATCATGGAATGGGCCAAGCATGAATCTAGGTGCCCAATCTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGGATGGTGTCTTTTCTTCCTCTCGTGATGTTAAGGTCCCTCTTCGTGACCAGGTTTACCATCCTTATGGAAATATGTCAACTGGTCCAGTTGATTCTTATGCTGATGCCAAATGCAGCATCTGTCATGTTGGGAAAGATGAAAATCTTCTACTACTTTGTGATCTCTGTGATGCTGCTTCACATACATACTGCGTTGGCCTGGGATATACTATTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACCATTGTCAATGAAGAATCAGACCAACAAAATGTTGAGCCAACAACTGAGCCAAGTGTAACCATCTTTGATATTGTGAGAGAAACAAGCAGCCAGGCGGTTAGAAGACCAAGGGCATCCCCTTTACAACAAAACCAGTCATCTCCTTCTGTTATTCCTTTGCCTGATAGGGTCAGTAGATTCAAGGGTAAAAATCCTGTTTCAGGTGTGGAACATATGCAGCGTAATATAGAGGCACTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCTCTTGCAATTCATTTCAATCTAGTGGCTCAAGTAGTCAGAAACAAGATTCTACTTCCTTATCACGGGGAAAATCAGATGATTTGCATTCAAGGACTTCCACAGGCCTTCAACAATCCACTGTCCGAGGTGGTCATTCTAGTAATATGTTGAATGACAGAGGCTTGAAAGATGTTGACAAGGCTTGGAAAACGATGGACAAGGCAAAGATGAAGCTACAGATTCATCGAAGAACTAGCAGCATTCCACGGGGAGTGGATAATCCCTCATACAGTGGAGCCAGAGAAATATCATCTGCACAACGTAATTACCAAGAATTGAAAAATCAACAGCCCAGAAAATTAGACTTCAGTTCCACTAGAATGGAGAAGCAGTGTGACTATTCTAGTCTCAACAAGAATTTGGAAAATCGCTGGTCTCCGAAGTTGGGAGAGAAAAGGCAAAGTAGGGTCAGATGTGAGGAGATGATACAACATTCAAGAGACCATATTACTCATTCAGAAGGATACTTTGAACGTCCATTGCCCAGAAATGTCCAAACTAGTATCCAGGGTGTTACCTGTTGTGAAGATGGAGAGAGAAATGTTGCTAAGGAACAAAGGCAGCCTGCTTGCTTGGTAACTTCAGTAGGTTCAGCTCCCTCCCGTGACAAATTTGATAGTGCGTTCTCCTCTAATAAGGATGTGGATATTTTCAATGAAGAAAAGAGGGCCAAAGGCATTGGGGATGGGAACGCAAGAAAAATTGAAGAAGCAAAAACCGAGATCCGATCTCTTGTTAAACTTAATCTGAAGTTCTTAACTAGAGATAAACAATTAGGTGTCGAAACCTTCAAGTTAGTAGCAAGGCAGGCCACCCATACCATCTTGGATGCTTGCTGTTCCGAGCAGCAAAAGTCTAATATATCACCCTCCTCAAGCTCAGTATGCAGCCATACTAATAATACTCAGCAGTTTCAGAAATCTACTTTAATGCCTAACTGTTGTCGACAATGCTTTTATGTCTTTGTAAACAATGTTGTCAATTCCATCATGTTGGAGAAAGTGGGTTGTTGA 1821 0.4245 MGSPMKRLKSQVEEDDDMQQGVCCGICYAEHGVSIAGEIDSCKHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMDGVFSSSRDVKVPLRDQVYHPYGNMSTGPVDSYADAKCSICHVGKDENLLLLCDLCDAASHTYCVGLGYTIPEGDWFCHDCAISRETIVNEESDQQNVEPTTEPSVTIFDIVRETSSQAVRRPRASPLQQNQSSPSVIPLPDRVSRFKGKNPVSGVEHMQRNIEALRENWNALRSGSLQFSCNSFQSSGSSSQKQDSTSLSRGKSDDLHSRTSTGLQQSTVRGGHSSNMLNDRGLKDVDKAWKTMDKAKMKLQIHRRTSSIPRGVDNPSYSGAREISSAQRNYQELKNQQPRKLDFSSTRMEKQCDYSSLNKNLENRWSPKLGEKRQSRVRCEEMIQHSRDHITHSEGYFERPLPRNVQTSIQGVTCCEDGERNVAKEQRQPACLVTSVGSAPSRDKFDSAFSSNKDVDIFNEEKRAKGIGDGNARKIEEAKTEIRSLVKLNLKFLTRDKQLGVETFKLVARQATHTILDACCSEQQKSNISPSSSSVCSHTNNTQQFQKSTLMPNCCRQCFYVFVNNVVNSIMLEKVGC* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03780 606 MobiDBLite consensus disorder prediction 260 275 - -
Rops2g03780 606 Pfam Ring finger domain 24 65 IPR001841 -
Rops2g03780 606 MobiDBLite consensus disorder prediction 326 346 - -
Rops2g03780 606 MobiDBLite consensus disorder prediction 260 310 - -
Rops2g03780 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
Rops2g03780 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 172 IPR013083 -
Rops2g03780 606 MobiDBLite consensus disorder prediction 286 303 - -
Rops2g03780 606 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Rops2g03780 606 SUPERFAMILY FYVE/PHD zinc finger 107 159 IPR011011 -
Rops2g03780 606 MobiDBLite consensus disorder prediction 193 215 - -
Rops2g03780 606 SUPERFAMILY RING/U-box 9 73 - -
Rops2g03780 606 MobiDBLite consensus disorder prediction 193 232 - -
Rops2g03780 606 Pfam PHD-finger 114 158 IPR019787 -
Rops2g03780 606 ProSiteProfiles Zinc finger PHD-type profile. 111 160 IPR019787 -
Rops2g03780 606 SMART ring_2 24 64 IPR001841 -
Rops2g03780 606 ProSiteProfiles Zinc finger RING-type profile. 24 65 IPR001841 -
Rops2g03780 606 PANTHER F18C1.6 PROTEIN 9 604 - -
Rops2g03780 606 SMART PHD_3 113 158 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03780 Rops-Chr2 69702389 69706812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03780 105 161 C2H2 Transcription Factor Family AT3G01460 41.379 9.08e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops2g03780 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03780 - - gmx:100808541 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03780 2 69702389 69706812 Rops2g03780 2 69702389 69706812 ECH