Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03779 ATGGCCGATGTGACTTTCCTTCACCACCACCACCACCACGAACCTGACGATGACCAAATCCTAATCCCCTTTTGGTCCCCCCACGATTTCGATTTCTACGCTTCCGATCCCGAATTCCCTCAAAACCACCATTTTTCTCGTGAAAACCAGGTTAATTTCGTCATGGATCTTTTCCAACAACGTGTGGAGCAATCTCAGGTAATGGGTCACACCGATCCGGTCTCACAACCCCTAAACGACACCGTTTTGGATGGTTTGGGACTTGATTTAGGGTTCGACGCTGACGATTTCTTCTTCGGGAGAAGGGTTTCCGGATCCGGATCCGAATCCGGGGATGCTCCATTTGAAAATTCCGTTCGCCTTGTTGGGTTCGGATCGGATTCTGAAGATGAAGAACAAAACGCGGTTTTGGGTATCTGCGATGAAGAGTATCACGAAAACGACGACGTTTCGGGCATCCCTCTCTGTTGGGACTCTCTTCAGTTAGAAGACAACAGAGAAAACTACGAAGATTTCGAGTGGGAAGAAGTTGATGCTCGTGTTGATGAGAGAGAAGTTTTGAGCATGCTCGCTGTTGAAGAAGTTGATAATTCTGCTGAAATTGAAGAAGAAGAAGTTAGCATTTTAAGGGTAGGTGAAGGAATGGAAAATTTGGAGTGGCAAGTTCTTTTGAATTCAAACAATTTAGGAACAAGCCCTGATTTGGAGCATGATGATGGAGAACCTTATTTTGGTGACAATGATGATTACATTTACACTGCAGAATATGAAATGATGTTTGGTCAATTTGTGGAAAATGAGAACAACCCATTAATGGGTAGGCCTCCGGCTTCTGTTTCATTTGTCCAGAACCTTCCTTCTGTAGCTGTGACCAAACAAGAAGTGGAAAACAACAATGCACTTTGTGCTGTTTGCAAAGATGAGTTTTTTGTTGGTGAACAAGTGAAGCAGTTGTCATGTTCTCATCGTTACCATGGTGATTGTATTGTGCCTTGGTTGGGGATTAGGAATACTTGCCCTGTTTGTCGTCATGAGTTCCCCACTGATGATGCTGATTATGAGCGTAGGAGGGTACAAAGATCTGTTATATAA 1092 0.4396 MADVTFLHHHHHHEPDDDQILIPFWSPHDFDFYASDPEFPQNHHFSRENQVNFVMDLFQQRVEQSQVMGHTDPVSQPLNDTVLDGLGLDLGFDADDFFFGRRVSGSGSESGDAPFENSVRLVGFGSDSEDEEQNAVLGICDEEYHENDDVSGIPLCWDSLQLEDNRENYEDFEWEEVDARVDEREVLSMLAVEEVDNSAEIEEEEVSILRVGEGMENLEWQVLLNSNNLGTSPDLEHDDGEPYFGDNDDYIYTAEYEMMFGQFVENENNPLMGRPPASVSFVQNLPSVAVTKQEVENNNALCAVCKDEFFVGEQVKQLSCSHRYHGDCIVPWLGIRNTCPVCRHEFPTDDADYERRRVQRSVI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03779 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 188 347 - -
Rops2g03779 363 SMART ring_2 302 342 IPR001841 -
Rops2g03779 363 Pfam Ring finger domain 302 343 IPR001841 -
Rops2g03779 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 349 IPR013083 -
Rops2g03779 363 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Rops2g03779 363 FunFam E3 ubiquitin-protein ligase RING1-like 262 349 - -
Rops2g03779 363 SUPERFAMILY RING/U-box 283 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03779 Rops-Chr2 69686432 69687682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03779 3 349 C3H Transcription Factor Family AT5G60820 38.835 1.78e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03779 - - pcin:129307991 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03779 2 69686432 69687682 Rops2g03779 2 69686432 69687682 ECH