Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03756 ATGGCAGAACCAGAAGAAAACCTTCAAACCTCGCCTATGGATGAAACCAAGAACAAGAATAAGAAGAAAAATAACAAGCGGGACAAAAAAAGACCTCGGAATATTGCTGAGGAGGAGCATGCAGAAGAAGAGGAGAGTGGGAATATTACTGATAGGGATGGAGAATCCTCGAAGAAGGAGGAAGAGGAGGTGGAAGGAGAAAGTGAAATAATGGAAGAGAAAAAGGTGAAGAAGAACAACAGTGGGTCTGGAATCATGAGCACTGTCTCTTTTGAATCTCTAGGATTGTCTGAACCTACTTATAAGGCCATTATGGATATGGGATTCCACAACATGACTCAGATTCAAGCGAGAACAATTCCACCACTTCTAACTGGAAAAGATGTACTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTAGCATTTTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAATTCACACCTCGAAATGGAGCTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCCAGGAGCTTCTTAAGTACCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAACTAGGAAAGTTGAAGCTGAACGCATTGCTAAAGGGGTAAATCTATTGGTAGCAACTCCTGGTCGGCTTCTAGATCATCTTCAAAATACAAAACGATTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGAATATTGGAAGCAAATTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGAATAGGCAAACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGGTTGATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTGATTGTTCTCTATTCCTTCTTGAAGAGACATCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCCGTCAAATTCCATGCAGACCTTCTTAATCTCATTCATATGAATTGCTCAAGTATTCACGGAAAACAAAAGCAGCAGACTCGGACAACTACCTTCTTTGACTTCTGTAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCCGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTCTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTAAAAGAATATGCATATGATGAAAAGAAGGTGGCAAATGTACAGTCTCACCTGGAGAATTTGGTGGTCAATAATTTCTTTTTGAACAAGATGGCTAAAGAAGCTTATAGATCGTACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAATGTTCACCGCCTTGATTTGCAGGAGGTCGCTGCTTCATTCTGTTTTTCAAACCCGCCGAATGTGAGTCTGAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAAACATGGATTCAGCCAAAGCAATCCTTATGGAAAGGGCAATGCAGACGATAAGCGGCAATTTGTGAGGCATTAG 1725 0.4116 MAEPEENLQTSPMDETKNKNKKKNNKRDKKRPRNIAEEEHAEEEESGNITDRDGESSKKEEEEVEGESEIMEEKKVKKNNSGSGIMSTVSFESLGLSEPTYKAIMDMGFHNMTQIQARTIPPLLTGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAQELLKYHSQTLGLVIGGSTRKVEAERIAKGVNLLVATPGRLLDHLQNTKRFIYKNLKCLMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRLIVLYSFLKRHQSKKVMVFFSSCNSVKFHADLLNLIHMNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFFLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQEVAASFCFSNPPNVSLNINSSKQRKKMRKVDGSKHGFSQSNPYGKGNADDKRQFVRH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03756 574 CDD DEADc_DDX18 100 297 IPR044773 GO:0003724|GO:0005524
Rops2g03756 574 SMART helicmild6 349 430 IPR001650 -
Rops2g03756 574 MobiDBLite consensus disorder prediction 1 84 - -
Rops2g03756 574 Pfam Helicase conserved C-terminal domain 325 429 IPR001650 -
Rops2g03756 574 MobiDBLite consensus disorder prediction 30 79 - -
Rops2g03756 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Rops2g03756 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Rops2g03756 574 PANTHER RNA HELICASE 30 477 - -
Rops2g03756 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 469 IPR001650 -
Rops2g03756 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 444 IPR027417 -
Rops2g03756 574 CDD SF2_C_DEAD 310 440 - -
Rops2g03756 574 FunFam RNA helicase 306 536 - -
Rops2g03756 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Rops2g03756 574 Gene3D - 67 301 IPR027417 -
Rops2g03756 574 MobiDBLite consensus disorder prediction 535 574 - -
Rops2g03756 574 SMART ultradead3 108 313 IPR014001 -
Rops2g03756 574 Pfam Domain of unknown function (DUF4217) 471 531 IPR025313 -
Rops2g03756 574 Pfam DEAD/DEAH box helicase 113 284 IPR011545 GO:0003676|GO:0005524
Rops2g03756 574 SMART DUF4217_3 470 533 IPR025313 -
Rops2g03756 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 297 IPR027417 -
Rops2g03756 574 Gene3D - 306 551 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03756 Rops-Chr2 69396744 69402851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03756 84 449 Eukaryotic Initiation Factors Gene Family AT3G19760 29.189 7.29e-48 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03756 K13179 - gmx:100798885 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03756 2 69396744 69402851 Rops2g03756 2 69396744 69402851 ECH