Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03717 ATGGCATCACCATTGGAACTAAGCTTGGATTGCGAGCCTCATAGCTATTCCATGCTACTGAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAGTTCCTTTCTCGCCTTGAGGAAGAACGTCTGAAGGTTGATGCTTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTAATCAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCAGAGTAAATCAAGGCGCAAGGCCAGTTTTAGAAGAATTTATACCCGTGAAGCATTTAACCACTGAAAGCTCTGAGAAGGCGGCAAACATATCAGATAAGGCAAATTGGATGACATCTGCTCAACTATGGAGCCAAACAAGTGAAGGAACCAAACAACAATCCACAATCACATCACCTAAAGAAGCTGATATAGGCTTCAACATCAGCCCTAAGCTAGTTCTAGACAACAAACAGAGAAATGGTGGAGCCTTTCTACCATTCTCAAAAGAAAGAAACTCCTGCCAAGGCTCTACATTGCAAACTCTCCCTAAACTGGCCCTTACCTCTGCTGAGAAAGAAATGGAAGACAAGAAGCATGCCGAGACAGACAAGGGAGTCTCATGTGAGAAGAGGGAGAATAATTTAGACAATGATCAAGGAAAAGGGAACTCAATTGCATCCAATGTCCAAACAACCACTACCACCAACACCACAACAACCCCACAAACTCATAGGAAAGCAAGAAGATGCTGGTCACCAGACTTGCACCGGAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCAACTCCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACTAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTTCACACGAGAAGACCAAGTCCAAGCCCACAAACAGGTGCACCGGCAGCACAGCTTGTGGTCCTAGGAGGAATATGGGTCCCACCGGAATATGCCGCAGCGGCCGCCCATACAGCCACCCCTGCACTCTATGCCGCGCATCCTAACTCCCACGCGCCACCACCACACTACTGTGGTGTCAGCCAAGAGTTCTACACTGTTGCGCCACCACCACAGCCGCTGCTTCCACCGCCTCCGCAGCACCACCATCACCTACATGTGTACAAGACCACAGCTCACGGCCACAGCTCGCCGGAATCAGCAAGGGACCGGTCGGAGAGCATCGTGGATGGAAAGTCGGAGAGTAGTAGCTGGAAGGGGGAGAGTGGTGGTGAGAAAGAAGGGGACAGAAAAGGGTTGGCTGAGGAGAGTAATGGGAGTGAGATCACTCTCAAATTCTAA 1323 0.4845 MASPLELSLDCEPHSYSMLLKSFGDQTDQTYKLEEFLSRLEEERLKVDAFKRELPLCMQLLINAMEASRQQLQAFRVNQGARPVLEEFIPVKHLTTESSEKAANISDKANWMTSAQLWSQTSEGTKQQSTITSPKEADIGFNISPKLVLDNKQRNGGAFLPFSKERNSCQGSTLQTLPKLALTSAEKEMEDKKHAETDKGVSCEKRENNLDNDQGKGNSIASNVQTTTTTNTTTTPQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGAPAAQLVVLGGIWVPPEYAAAAAHTATPALYAAHPNSHAPPPHYCGVSQEFYTVAPPPQPLLPPPPQHHHHLHVYKTTAHGHSSPESARDRSESIVDGKSESSSWKGESGGEKEGDRKGLAEESNGSEITLKF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03717 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 241 296 IPR006447 GO:0003677
Rops2g03717 440 Coils Coil 33 53 - -
Rops2g03717 440 MobiDBLite consensus disorder prediction 213 241 - -
Rops2g03717 440 MobiDBLite consensus disorder prediction 184 212 - -
Rops2g03717 440 SUPERFAMILY Homeodomain-like 238 299 IPR009057 -
Rops2g03717 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
Rops2g03717 440 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 413 IPR044787 GO:0003700|GO:0006355
Rops2g03717 440 MobiDBLite consensus disorder prediction 413 430 - -
Rops2g03717 440 Pfam Myb-like DNA-binding domain 243 294 IPR001005 -
Rops2g03717 440 MobiDBLite consensus disorder prediction 383 440 - -
Rops2g03717 440 Gene3D - 240 298 - -
Rops2g03717 440 MobiDBLite consensus disorder prediction 184 242 - -
Rops2g03717 440 MobiDBLite consensus disorder prediction 390 404 - -
Rops2g03717 440 FunFam Myb family transcription factor 240 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03717 Rops-Chr2 68813058 68815528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03717 1 440 G2-like Transcription Factor Family AT2G03500 53.404 3.47e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops2g03717 Myb_DNA-binding 9.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03717 - - gmx:100807925 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03717 2 68813058 68815528 Rops2g03717 2 68813058 68815528 ECH