Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03716 ATGACGATGGACGATGACAGCTCTATATATGTTGGGGGTCTTCCCTACGACGCCACCGAAGATACCATTCGCAATGTCTTCAATTTATATGGCGCCATTCTTGATGTCAAGATTATTAATGACCAACGCACTAAGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAATCGATGCCATCAACGACATGAATGGCAGAACCATTGGCGGGCGTGTGGTTAAAGTTAATGGGGTGAGGGCTCGTGGTGGAAGATCAAATTTTGGTAGAGAACGTTATTATTATCATAATGATGAGAGGAATGGAGACTGGGATCGTGGCAGAGATCGAGATCATGATTATGATCACGATAATGATAAGGATGGATATGGGAATCGGAACAGTGATAGGTCTCGTGACCGTGATAGGTCCCGCGACCGGGACCGGGACAGGGAAAGAAGAATTGAACATATGCATGATTATGATGAAGCTAGAGAACCTATGGTAGATACTGATTGGAGTCGAGAGGATAATCGGGCTGAAAATGAACAAGAAAATGGCAGGGCACGTGGTGGAGATGTGGATAGAGACCACAACTTAGATTTGGATACAGATAGGATGATGGATAGGACCAGTGATCCTGATAGAAGTTTTGATGAGCATAGAAAAGAACAGTCAAGGAGAAACAATGATTTGAATGTTACAAATCGACATAGCATGGATCTTTCATCAGATTCAAATGGTAATCACAATGATCAGGTAGAAGATGAATTACAGAGGTCAACGCAACAACTTGATCAACTAAAAAAGGAGGTTTCTCAGTTGGAAGAGGGATTGGAAGAGAGGAGACTTCATGTTATTGAGTTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCACTGCAAAGAAACACTCTTCATGTCGTCAGATGCAGTTGACCAAGCTGCATAACTGTTATCTGCAAGTGAAAGATTGTACAGAAAGACTCAAAACCAGTGAAAAAGAACTTCAGGCTCTAATTGATTCAGGAATGTTAGAAAGTGATGGTGATGGTGTTGGACAACTTACAAATGGAAGTCTCGATGGTAGATAG 1086 0.418 MTMDDDSSIYVGGLPYDATEDTIRNVFNLYGAILDVKIINDQRTKGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVRARGGRSNFGRERYYYHNDERNGDWDRGRDRDHDYDHDNDKDGYGNRNSDRSRDRDRSRDRDRDRERRIEHMHDYDEAREPMVDTDWSREDNRAENEQENGRARGGDVDRDHNLDLDTDRMMDRTSDPDRSFDEHRKEQSRRNNDLNVTNRHSMDLSSDSNGNHNDQVEDELQRSTQQLDQLKKEVSQLEEGLEERRLHVIELQKQSKKLEDALITAKKHSSCRQMQLTKLHNCYLQVKDCTERLKTSEKELQALIDSGMLESDGDGVGQLTNGSLDGR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03716 361 MobiDBLite consensus disorder prediction 102 227 - -
Rops2g03716 361 MobiDBLite consensus disorder prediction 246 262 - -
Rops2g03716 361 Coils Coil 247 302 - -
Rops2g03716 361 CDD RRM_SF 9 80 - -
Rops2g03716 361 SMART rrm1_1 8 80 IPR000504 GO:0003723
Rops2g03716 361 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 194 - -
Rops2g03716 361 Coils Coil 320 340 - -
Rops2g03716 361 Gene3D - 2 97 IPR012677 -
Rops2g03716 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Rops2g03716 361 PANTHER GEO13361P1-RELATED 6 188 - -
Rops2g03716 361 MobiDBLite consensus disorder prediction 102 262 - -
Rops2g03716 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Rops2g03716 361 MobiDBLite consensus disorder prediction 228 245 - -
Rops2g03716 361 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03716 Rops-Chr2 68808282 68811844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03716 2 79 Eukaryotic Initiation Factors Gene Family AT1G71770 30.769 3.66e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03716 - - gmx:100816804 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03716 2 68808282 68811844 Rops2g03716 2 68808282 68811844 ECH